Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_O02
(357 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63173 Cluster: 60S ribosomal protein L38; n=33; Eukary... 47 1e-04
UniRef50_UPI0000F201A6 Cluster: PREDICTED: similar to 60S riboso... 46 3e-04
UniRef50_Q962S5 Cluster: Ribosomal protein L38; n=14; Eukaryota|... 44 6e-04
UniRef50_O17570 Cluster: 60S ribosomal protein L38; n=24; Eukary... 41 0.007
UniRef50_Q0V9Y6 Cluster: LOC548667 protein; n=5; Xenopus|Rep: LO... 39 0.029
UniRef50_O22860 Cluster: 60S ribosomal protein L38; n=2; core eu... 39 0.029
UniRef50_Q4RJ17 Cluster: Chromosome 1 SCAF15039, whole genome sh... 31 7.7
UniRef50_A2ESM8 Cluster: Putative uncharacterized protein; n=1; ... 31 7.7
>UniRef50_P63173 Cluster: 60S ribosomal protein L38; n=33;
Eukaryota|Rep: 60S ribosomal protein L38 - Homo sapiens
(Human)
Length = 70
Score = 46.8 bits (106), Expect = 1e-04
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +3
Query: 84 FNLTARRKDAKSVKIKKNPENVKFK 158
F LTARRKDAKSVKIKKN +NVKFK
Sbjct: 11 FLLTARRKDAKSVKIKKNKDNVKFK 35
Score = 38.3 bits (85), Expect = 0.039
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 191 LITDKEKAXKLKQSLPPGL 247
+ITDKEKA KLKQSLPPGL
Sbjct: 46 VITDKEKAEKLKQSLPPGL 64
>UniRef50_UPI0000F201A6 Cluster: PREDICTED: similar to 60S ribosomal
protein L38; n=1; Danio rerio|Rep: PREDICTED: similar to
60S ribosomal protein L38 - Danio rerio
Length = 154
Score = 45.6 bits (103), Expect = 3e-04
Identities = 21/25 (84%), Positives = 23/25 (92%)
Frame = +3
Query: 84 FNLTARRKDAKSVKIKKNPENVKFK 158
F LTA+RKDAKSVKIKKN +NVKFK
Sbjct: 27 FLLTAKRKDAKSVKIKKNKDNVKFK 51
>UniRef50_Q962S5 Cluster: Ribosomal protein L38; n=14;
Eukaryota|Rep: Ribosomal protein L38 - Spodoptera
frugiperda (Fall armyworm)
Length = 70
Score = 44.4 bits (100), Expect = 6e-04
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3
Query: 84 FNLTARRKDAKSVKIKKNPENVKFK 158
F L ARRKDAKSVKIKKN +NVKFK
Sbjct: 11 FLLKARRKDAKSVKIKKNQQNVKFK 35
Score = 40.3 bits (90), Expect = 0.010
Identities = 18/20 (90%), Positives = 19/20 (95%)
Frame = +2
Query: 191 LITDKEKAXKLKQSLPPGLQ 250
+ITDKEKA KLKQSLPPGLQ
Sbjct: 46 VITDKEKAEKLKQSLPPGLQ 65
>UniRef50_O17570 Cluster: 60S ribosomal protein L38; n=24;
Eukaryota|Rep: 60S ribosomal protein L38 -
Caenorhabditis elegans
Length = 70
Score = 40.7 bits (91), Expect = 0.007
Identities = 19/25 (76%), Positives = 20/25 (80%)
Frame = +3
Query: 84 FNLTARRKDAKSVKIKKNPENVKFK 158
F + ARRKDAKSVKIKKN N KFK
Sbjct: 11 FLVKARRKDAKSVKIKKNSNNTKFK 35
Score = 35.9 bits (79), Expect = 0.21
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2
Query: 191 LITDKEKAXKLKQSLPPGLQ 250
++ DK+KA KLKQSLPPG+Q
Sbjct: 46 VVADKDKAEKLKQSLPPGIQ 65
>UniRef50_Q0V9Y6 Cluster: LOC548667 protein; n=5; Xenopus|Rep:
LOC548667 protein - Xenopus tropicalis (Western clawed
frog) (Silurana tropicalis)
Length = 419
Score = 38.7 bits (86), Expect = 0.029
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 102 RKDAKSVKIKKNPENVKFKASMLK 173
RKDAKSVKIKKN +NVKFK K
Sbjct: 366 RKDAKSVKIKKNKDNVKFKVRCSK 389
Score = 38.3 bits (85), Expect = 0.039
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 191 LITDKEKAXKLKQSLPPGL 247
+ITDKEKA KLKQSLPPGL
Sbjct: 395 VITDKEKAEKLKQSLPPGL 413
>UniRef50_O22860 Cluster: 60S ribosomal protein L38; n=2; core
eudicotyledons|Rep: 60S ribosomal protein L38 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 69
Score = 38.7 bits (86), Expect = 0.029
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = +3
Query: 84 FNLTARRKDAKSVKIKKNPENVKFK 158
F LTARRKDA+SVKIK++ + VKFK
Sbjct: 11 FLLTARRKDARSVKIKRSKDIVKFK 35
Score = 33.1 bits (72), Expect = 1.5
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +2
Query: 194 ITDKEKAXKLKQSLPPGL 247
+ D+EKA KLKQSLPPGL
Sbjct: 47 VFDQEKADKLKQSLPPGL 64
>UniRef50_Q4RJ17 Cluster: Chromosome 1 SCAF15039, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 1
SCAF15039, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 2009
Score = 30.7 bits (66), Expect = 7.7
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +3
Query: 144 NVKFKASMLKVPVHPGSSLTKRRLXNLSRVYLQVSKLKK*SDVTRL 281
N +S L+ P S LT+ +L NLS L VSK+K +T L
Sbjct: 87 NELLSSSKLRGPAGSSSVLTEEQLTNLSPTALTVSKIKPGMKLTEL 132
>UniRef50_A2ESM8 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 2481
Score = 30.7 bits (66), Expect = 7.7
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 63 NQRYQRLFNLTARRKDAKSVKIKKNPENVKFKASMLKVPVHPGSSLTKRRLXNLSRVYL 239
NQ+ Q F T RK AK++K+K P N+K K P P S L + L++ +
Sbjct: 917 NQQQQEPFVKTPSRKRAKTIKVKSEP-NIK-----PKQPKRPSSPLVNKEEPKLAKTQI 969
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,742,678
Number of Sequences: 1657284
Number of extensions: 3734957
Number of successful extensions: 9395
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9394
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11941480628
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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