Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O02
         (357 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    30   0.12 
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    28   0.37 
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    25   3.5  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    25   4.6  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    24   6.1  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    24   6.1  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 15/22 (68%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +3

Query: 96  ARRKDAKSVKIKKNP-ENVKFK 158
           ARRKDA S +IKKN  ++VKFK
Sbjct: 15  ARRKDATSARIKKNTNKDVKFK 36



 Score = 27.9 bits (59), Expect = 0.49
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 191 LITDKEKAXKLKQSLPPGL 247
           ++ D +KA KL+QSLPP L
Sbjct: 47  VVADAKKAEKLRQSLPPDL 65


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 28.3 bits (60), Expect = 0.37
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +2

Query: 191 LITDKEKAXKLKQSLPPGL 247
           ++ D +KA KL+QSLPP L
Sbjct: 47  VVADAKKAEKLRQSLPPAL 65



 Score = 26.2 bits (55), Expect = 1.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 78  RLFNLTARRKDAKSVKIKKNPEN-VKFK 158
           +LF   A R DA S ++KKN    VKFK
Sbjct: 9   KLFLQLAHRGDATSARVKKNQNKAVKFK 36


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 145 FSGFFFILTDLASFLL 98
           F GFFFIL  L SFL+
Sbjct: 17  FWGFFFILFPLVSFLM 32


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 66  QRYQRLFNLTARRKDAKSVKIKKNPEN 146
           +R +R  N +  + +AKS ++K NPEN
Sbjct: 103 KRRRRFENGSRSQNNAKSEELKVNPEN 129


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 90  LTARRKDAKSVKIKK-NPENVKFKASMLKVPVHPGSSLTKRR 212
           L ++ K+  S+  K  +P++   KAS +     PG + ++RR
Sbjct: 331 LDSKEKNTPSITAKAGSPQSAPSKASYISPYARPGITTSRRR 372


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 154 NLTFSGFFFILTDLASF 104
           NL  +GFFF+L  + SF
Sbjct: 359 NLVIAGFFFMLMGIVSF 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,019,826
Number of Sequences: 5004
Number of extensions: 16490
Number of successful extensions: 45
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)