Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O02
         (357 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528     38   0.002
07_03_0802 - 21614891-21615195,21615637-21615823,21615939-216161...    38   0.002
05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471     38   0.002
11_08_0024 + 27747449-27747940,27748141-27750177                       26   7.6  

>11_04_0100 + 13465369-13465371,13465464-13465647,13466506-13466528
          Length = 69

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 84  FNLTARRKDAKSVKIKKNPENVKFKASMLK 173
           F LTARRKDA+SV+IK+  + VKFK    K
Sbjct: 11  FLLTARRKDARSVRIKRTKDAVKFKVRCSK 40



 Score = 31.5 bits (68), Expect = 0.20
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = +2

Query: 179 CTPWLIT----DKEKAXKLKQSLPPGL 247
           C+ +L T    D +KA KLKQSLPPGL
Sbjct: 38  CSKYLYTLCVFDADKANKLKQSLPPGL 64


>07_03_0802 -
           21614891-21615195,21615637-21615823,21615939-21616154,
           21616669-21616872,21617336-21617569,21617670-21617763,
           21618844-21618890,21619293-21619309,21620183-21620459
          Length = 526

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 84  FNLTARRKDAKSVKIKKNPENVKFKASMLK 173
           F LTARRKDA+SV+IK+  + VKFK    K
Sbjct: 41  FLLTARRKDARSVRIKRTKDAVKFKVRCSK 70



 Score = 31.5 bits (68), Expect = 0.20
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 4/27 (14%)
 Frame = +2

Query: 179 CTPWLIT----DKEKAXKLKQSLPPGL 247
           C+ +L T    D +KA KLKQSLPPGL
Sbjct: 68  CSKYLYTLCVFDADKANKLKQSLPPGL 94


>05_06_0013 + 24852262-24852264,24852717-24852900,24853449-24853471
          Length = 69

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 17/25 (68%), Positives = 22/25 (88%)
 Frame = +3

Query: 84  FNLTARRKDAKSVKIKKNPENVKFK 158
           F LTARRKDA+SV+IK++ + VKFK
Sbjct: 11  FLLTARRKDARSVRIKRSKDAVKFK 35



 Score = 31.1 bits (67), Expect = 0.27
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +2

Query: 194 ITDKEKAXKLKQSLPPGL 247
           + D +KA KLKQSLPPGL
Sbjct: 47  VHDTDKANKLKQSLPPGL 64


>11_08_0024 + 27747449-27747940,27748141-27750177
          Length = 842

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 243 PGGKLCLSXSAFSLSVMSQGVQEP*ASKP*T*HSQGS 133
           PG  +C+S SA  L  +S  V    AS P    S GS
Sbjct: 3   PGSPVCISVSALLLITLSPAVAAAAASPPGRSKSNGS 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,411,179
Number of Sequences: 37544
Number of extensions: 98024
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)