Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O02
         (357 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...    41   3e-04
Z68227-8|CAA92513.1|  275|Caenorhabditis elegans Hypothetical pr...    27   3.9  
L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical pr...    27   5.1  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score = 40.7 bits (91), Expect = 3e-04
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = +3

Query: 84  FNLTARRKDAKSVKIKKNPENVKFK 158
           F + ARRKDAKSVKIKKN  N KFK
Sbjct: 11  FLVKARRKDAKSVKIKKNSNNTKFK 35



 Score = 35.9 bits (79), Expect = 0.008
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 191 LITDKEKAXKLKQSLPPGLQ 250
           ++ DK+KA KLKQSLPPG+Q
Sbjct: 46  VVADKDKAEKLKQSLPPGIQ 65



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +1

Query: 52 MPREIKDIKDFL 87
          MP+EIK+IKDFL
Sbjct: 1  MPKEIKEIKDFL 12


>Z68227-8|CAA92513.1|  275|Caenorhabditis elegans Hypothetical
           protein F49C12.10 protein.
          Length = 275

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +3

Query: 126 IKKNPENVKF-KASMLKVPVHPGSSLTKRRLXNLSRVYLQVSKLKK 260
           ++K P  VKF K S+      PG+S T  RL N  R+Y+    +KK
Sbjct: 231 LEKAPFFVKFFKNSLRATYCAPGTS-TYERLKNKQRIYIAAMWIKK 275


>L16621-8|AAA28228.1|  632|Caenorhabditis elegans Hypothetical
           protein ZK688.2 protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 14  PLTVLVENYSSSTCRVKSKISKTF*LNGEEERRQIGQNKEE 136
           P   LVE ++ +T ++++++ +      EEE R+ G N +E
Sbjct: 546 PAITLVERFNEATGQLETEVKRDEKKKKEEELREEGDNGKE 586


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,596,865
Number of Sequences: 27780
Number of extensions: 91480
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)