Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_O02
         (357 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.20 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.8  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    20   7.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.4 bits (53), Expect = 0.20
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 232 TLLKFXSLLFVSDEPGCTGTL-SIEALNLTFSGF--FFILTDLA 110
           TL+   S++FV    GC G +     + +TF+ F  F +L  +A
Sbjct: 54  TLIVLGSIIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIA 97


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 183 HPGSSLTKRRL 215
           H GSSLTK RL
Sbjct: 137 HSGSSLTKSRL 147


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 34  KLFVFNMPREIKDIKDFLT*RRGGKTP 114
           K+  F + REI+   +     RGGK P
Sbjct: 775 KIADFGLSREIESATEGAYTTRGGKIP 801


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 184 CTGTLSIEALNLTFSGFFFILTDL 113
           CT T     + L FSG F + + L
Sbjct: 49  CTDTFMEGVIVLAFSGLFSVFSFL 72


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,262
Number of Sequences: 438
Number of extensions: 887
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)