Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_N20
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    28   1.4  
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   1.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    27   3.1  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   4.1  
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |...    25   7.2  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    25   9.5  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   9.5  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   9.5  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +1

Query: 559 NQPHHVQGPPPTRRGRAAHQPS-STPSSWR 645
           + PHH   P P  R +  HQ S S P S R
Sbjct: 72  DSPHHASNPHPNSRQKHQHQTSKSVPRSQR 101


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
 Frame = +2

Query: 326 RDEWLTMEQTCY--NMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEER 499
           +D+W +     Y   ++ +++  ++++ I       Y S+++V+  G + L     T E 
Sbjct: 390 KDKWTSQLGVLYLSPLVGEELASQISSKIYDDLHAFYKSLNSVD--GISNL-----TIEE 442

Query: 500 EHATKLIDYLLMRGKLTGSVTNLITYRGPRQHVVG 604
           E        L   G+L  S TNL  YRG R  VVG
Sbjct: 443 EELVNTDFSLAYGGRLLLSHTNLHLYRGHRYGVVG 477


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 403 NPVLSHG-GLLLDRYGEPPRLREAILRC 483
           +P L +G G+L DRYG      EA ++C
Sbjct: 437 DPKLWYGIGILYDRYGSHEHAEEAFMQC 464


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 26  GWPPYRCAVHYLVQFKVTYANRTYLFE 106
           GWP YR   H    FK+  +N  ++FE
Sbjct: 131 GWPLYRKYGHAYDAFKLAISNPDHVFE 157


>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -2

Query: 289 GRS*GSNESEDSKENSPHLNFSYNHRFFDD--IQKNMC 182
           G S   N S+ + +N PHL+    ++ F+D  I K++C
Sbjct: 363 GESKLPNTSKQASQNLPHLDDELAYQRFEDQVIDKSVC 400


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 574 VQGPPPTRRGRAAHQPSSTPSSWRV 648
           V+  P   RG+A ++PS    +W++
Sbjct: 343 VKANPRVNRGKAGYEPSENIINWKI 367


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 78  HTRIGLIYLNFLRIISRLLRQCV*RLDLYN 167
           H RI  I L F+R+ S++ R CV  +++Y+
Sbjct: 327 HARIKNIEL-FIRLYSQMYRHCVPIIEIYD 355


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 308 VSPVTIRDEWLTMEQTCYNMMRKQIQEEV 394
           +S  +++  ++  EQ  Y   +KQ QEE+
Sbjct: 39  LSDASVKSSYVDQEQQAYENWKKQEQEEI 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,164
Number of Sequences: 5004
Number of extensions: 44165
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)