Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_N19
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    26   4.1  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   9.5  
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    25   9.5  

>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 444 FSQGRSP-DTXTQSKYLRSPRRSIFCH*ARDGPFVIRPRR 328
           +  G+ P  T T S  L+ PR ++     RDG F I P R
Sbjct: 95  YGNGKKPIQTQTLSGRLQKPRTNLMVGLIRDGQFHIVPLR 134


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 365 QWQKIERLGLRKYFDCVLVSGDLP 436
           QWQ ++     K+F+  L S DLP
Sbjct: 5   QWQSVQNRTFTKWFNTKLSSRDLP 28


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -2

Query: 538 IXVSSLCPXHNAVTGLNVKKFACFVEDVLIRFLPGQVPGYEXAVE 404
           + +S  C  H    GL+V    CF + +++    GQV  ++ + +
Sbjct: 4   VALSKSCKTHLLDEGLDVSSIHCFDQYLIVGQCSGQVMVFDVSTD 48


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 380 ERLGLRKYFDCVLVSGD 430
           +R+G RKY +C  ++GD
Sbjct: 152 QRIGARKYMECSSLTGD 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,498,906
Number of Sequences: 5004
Number of extensions: 48328
Number of successful extensions: 116
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)