Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_N18
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.8
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.8
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.8
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.8
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.3
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 3.1
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 5.4
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 5.4
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 26 5.4
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 7.1
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 25 7.1
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 25 9.4
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 9.4
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.4
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 333 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 434
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 333 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 434
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 333 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 434
L +W L FSK++ Q ++CL F L Q +
Sbjct: 83 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 117
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 333 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 434
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 199
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 344 DTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYN 454
+ + +K Y++TG V ++ L I DDL +Y+
Sbjct: 112 EARLQAVKLAYQKTGRIVYDAPLQNIHNWDDLYNYYD 148
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 211 RCLNLFIYFGIFFLSLS 161
RCL LF +F +FFLS S
Sbjct: 114 RCLLLFFFFLLFFLSFS 130
>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 141 LPRRKGNNTFLNISYFFLVXS*SVLLYFYIILKQC 37
L + + N+F N+ +FFL + +L+F I L C
Sbjct: 63 LAKTEFKNSFSNLHFFFLFWLLNFILFFRIHLYSC 97
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +3
Query: 294 KYVQHTD*MEIQNLKHWTQNLQFSKLVMKKQAIVCLIHFCIQLKQLMT*QNFTIHLCTQL 473
KY++ T EIQ NL+FS +K++ + L+Q T ++L QL
Sbjct: 908 KYIEDTLRSEIQEAAEKVSNLEFSNFNLKEENSNMQLQLMKALEQRNTGAKQLVNLRMQL 967
Query: 474 HRLT 485
T
Sbjct: 968 STAT 971
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 158 IRQAQKKYPKVDKKVQAAAESLAARGFLRPTKSWDPPTNINETILKI 298
I +Q K+ + K A+ +LAA G + +S++PP ++++ +KI
Sbjct: 1463 IEYSQAKHAAIILK-DASNYTLAAHGNVEKAESFEPPVILSQSDVKI 1508
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.8 bits (54), Expect = 5.4
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +2
Query: 395 VPNSLLHTIETVDDLTEFYNTPVYTTTPFDALKLMDLPKNLHVQKDYVXFHPDTDTLFNG 574
+P L + DD YN +Y+T L+ +V+K+ + + +F+
Sbjct: 388 IPFVLRRSSPLSDDKEVMYNFDMYSTLHVPKECLLSKSYRNNVRKEVILLMTEYFAIFSN 447
Query: 575 VSAFPK-SSTIVTGLK 619
AFP+ S+ I+ L+
Sbjct: 448 SIAFPELSAPIIAQLR 463
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 368 ACYEETGHSVPNSLL--HTIETVDDLTEFYNTPVYTTTP 478
ACY + + + L +T+ T T F TP TTTP
Sbjct: 913 ACYNPSQYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTP 951
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 401 NSLLHTIETVDDLTEFY-NTPVYTTTPFDALKLMDLPKNLHVQKDYVXFHPDTDTLF 568
NS I +D L E+ N Y KL+D LHV + V HP + TLF
Sbjct: 58 NSTTPCIYALDSLLEYQQNEEAYEKNFQFIQKLID--DLLHVIEGLVLIHPKSQTLF 112
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/45 (31%), Positives = 27/45 (60%)
Frame = +1
Query: 241 TSHQVMGSTYKHQ*NNSENMCNIRIKWKFRI*STGHKIYSSQSLL 375
++ QV+ +TY++ + + RIKW + I GH++ ++QS L
Sbjct: 514 SNFQVLLTTYEYIIKDRPLLS--RIKWIYMIIDEGHRMKNTQSKL 556
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 513 IYMFKKIMLXFIQIRTLYSMASPLFRRVR 599
+Y F + + IR +Y+ LFRR+R
Sbjct: 233 MYQFPYVSVPIYSIRQMYTCFYSLFRRIR 261
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 155 SIRQAQKKYPKVDKKVQAAAESLAARGFLRPTKSWDPPTN 274
++R+A +P VD + + ++ + +RPT PP N
Sbjct: 745 AVREADVYHPHVDTSIDSLSQISSQPFEMRPTAIPPPPKN 784
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,677
Number of Sequences: 5004
Number of extensions: 55893
Number of successful extensions: 139
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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