Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_N14
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    29   0.42 
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   3.0  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   6.8  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   6.8  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 418 PSVETGLLSQXPXNTVMQALXSLNDTQVNDFLSGKSPLN 534
           P V+T L  Q P N+ M+ L  +   Q+ ++LS K P N
Sbjct: 694 PVVKTWLDVQPPVNSPMEFLNHIGFPQMAEYLSAKYPYN 732


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 448 FDSAIRSRRLVVG*PATRPSVHFLPTCR 365
           F++   SRRLVVG PA+  +++ +PT +
Sbjct: 54  FEAQEFSRRLVVGRPASVSTLYVIPTSK 81


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 6   TDDGHIKKLGVWRDPVYFYSAIK*LCNLS 92
           TDD  +  +  W+ P+ F +  K LC +S
Sbjct: 229 TDDRGVIGVSYWKQPLVFNNGFKGLCAVS 257


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 252 GKITTRGGMYIQSYVRALGRATPVHFGSSS 163
           G   T+  MYI  ++   G ATP+  GS +
Sbjct: 130 GLARTKAQMYIFRFLAGFGSATPMGLGSGT 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,335
Number of Sequences: 5004
Number of extensions: 41969
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)