Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_N14
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    31   1.00 
11_03_0224 + 11886184-11886190,11886582-11886871,11887424-11887516     30   1.3  
01_05_0362 - 21388520-21389827                                         30   1.7  

>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 19/42 (45%), Positives = 23/42 (54%)
 Frame = +3

Query: 345 SRETIXGRHVGRKWTDGRVAGHPTTKRRDRIAESXTRXYSDA 470
           S +T+ GRHV RKW  GRV G     R++  AE   R  S A
Sbjct: 142 SADTLWGRHVNRKW--GRVLG--AAARKEWEAELAARRSSGA 179


>11_03_0224 + 11886184-11886190,11886582-11886871,11887424-11887516
          Length = 129

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 334 CLLHRERQLXDGTLEENGLMDGSRVILLPSVETGLLSQXPXNTV 465
           C LH++  L D T EE  +++ S  I+L S +  +  Q P   V
Sbjct: 49  CALHKDNVLADPTAEEESIIETSVTIVLDSSDQIVSIQKPGGAV 92


>01_05_0362 - 21388520-21389827
          Length = 435

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 294 TXFKETKGVKGSNMLTTSRETIXGRHVGRKWTDGRV 401
           T F E  G  G+N+L    + I GR V  +W +G+V
Sbjct: 186 TAFGEQDGQAGNNLLQLLLQYIAGRQVPIRWPNGQV 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,394,384
Number of Sequences: 37544
Number of extensions: 265879
Number of successful extensions: 555
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)