Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_N10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    28   1.4  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   5.5  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   9.5  

>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 388 DAVSGIGTDEEAIIEILCTLSNYGIRTISAFYEQLYGKSLQSD 516
           DA++ +   +E I E   T  +Y IRT+S  Y+  Y  S   D
Sbjct: 215 DAITSLWDPQELICERSITRMDYPIRTLSFSYDSRYLASGSED 257


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 111 CTCKGSSCCPLMLRFFC 61
           C+CK  + CPL + + C
Sbjct: 675 CSCKSITVCPLHIEYLC 691


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = +2

Query: 44  GCVAVKQKNLNM----SGQQLLPLQVHPHGCTPRSLSTRPRMP 160
           G VA+++  L +    S Q  L   ++P  CTPR +   P  P
Sbjct: 771 GIVAIQKNTLKIFTVDSLQDDLKSDIYPLICTPRKIVKHPNFP 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,466,268
Number of Sequences: 5004
Number of extensions: 45854
Number of successful extensions: 126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)