Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_N06
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces ... 51 2e-07
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 45 8e-06
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 45 1e-05
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 27 1.8
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 2.3
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 26 4.1
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 26 4.1
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch... 26 5.4
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo... 25 7.2
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot... 25 7.2
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 25 9.5
>SPAC589.09 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 388
Score = 50.8 bits (116), Expect = 2e-07
Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 21/164 (12%)
Frame = +2
Query: 221 LKRVLAHCEKDAKQAADMLWDILTXRKNVGASNINE----------DNIRMDYVKEGVFF 370
L R LA C D+ +A+ L + L R + G I E D+ ++ ++ G
Sbjct: 83 LVRFLASCNNDSHEASQKLINTLQWRVDTGVERIVERGELYAKETNDDQFLEQLRTGKVT 142
Query: 371 PRGRDVDGSLLLVFKSKMHIKGQRDYDELKKIMIYWFDXVX-----------REENGKKI 517
GRD+ + + +H + + L+++ ++ + + ++ + +
Sbjct: 143 MLGRDLSDRPICYIQVHLHQPSKLTQNSLREMTVWVMETMRLFLRPQKTLKDSMDSPQNV 202
Query: 518 XMFFDMDGTGLSNMDMELIKYLITLFKCYYPYFLNYIIIYNMPW 649
+ FD+ L NMD +KYL + + YYP L I++ PW
Sbjct: 203 NVLFDLSNFSLHNMDYSFVKYLASCLEYYYPQSLGVCILHKSPW 246
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 45.2 bits (102), Expect = 8e-06
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Frame = +2
Query: 302 NVGASNINEDNIRMD--YVKE---GVFFPRGRDVDGSLLLVFKSKMHIKGQRDYDELKKI 466
NVG N D++ D +V++ G F G D + ++++H G + ++++
Sbjct: 157 NVGEIVCNADHLDKDDDFVRQLRIGKCFIFGEDKHNRPVCYIRARLHKVGDVSPESVERL 216
Query: 467 MIYWFDX--VXREENGKKIXMFFDMDGTGLSNMDMELIKYLITLFKCYYPYFLNYIIIYN 640
++ + + + + + FDM +SNMD +K++I F+ +YP L I++
Sbjct: 217 TVWVMETARLILKPPIETATVVFDMTDFSMSNMDYGPLKFMIKCFEAHYPECLGECIVHK 276
Query: 641 MPW 649
PW
Sbjct: 277 APW 279
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 44.8 bits (101), Expect = 1e-05
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Frame = +2
Query: 263 AADMLWDILTXRKNVGASNI---NEDNIRMDYVKEGVFFPRGRDVDGSLLLVFKSKMHI- 430
++DML + + R+ +I E+ + ++VK ++F G+D G ++ I
Sbjct: 69 SSDMLANAIVWRQQANLRSIMVRGENGLNQNFVKASMYFIWGQDKKGRAIVFLNLHNFIP 128
Query: 431 -KGQRDYDELKKIMIYWFDX----VXREENGKK-IXMFFDMDGTGLSNMDMELIKYLITL 592
K +D +ELK +++Y + + E+N K + D+ N+D++ +
Sbjct: 129 PKNTKDMEELKALILYAMENARLFLDSEQNAAKGVLGLVDLTYFSRKNIDLDFARVFAET 188
Query: 593 FKCYYPYFLNYIII 634
F+ YYP L +I
Sbjct: 189 FQNYYPEILGQALI 202
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = -1
Query: 424 HFGFEDEEETAIHVSAPREEDTFFNIVHAYVVLVDVGSSDIFPXGKNVPQH 272
HF D + +S PR+ F+N V + + V S I NVP +
Sbjct: 558 HFNLNDNNNNKV-LSIPRDSLQFYNAVFSDDIFVTTNSEQIQNCVLNVPMY 607
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 385 VSAPREEDTFFNIVHAYVVLVDVGSSDIFPXGKNVPQHVGSLLSVFL 245
VSA R++ + AY L DVGS + V Q V S+L +FL
Sbjct: 2203 VSALRKDQLDSLVSIAYHSLRDVGSQGVNLPAFEVAQGVNSILPIFL 2249
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 539 GTGLSNMDMELIKYLITLFKCYYPYFLN 622
G G N+D++L ++ L+K +P+ LN
Sbjct: 573 GVGKLNLDLDLGLFVQRLYKIIFPFSLN 600
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +2
Query: 530 DMDGTGLSNMDM--ELIKYLITLFKCYYPYFLNYIIIYNMPWG 652
D+ G G++++ I+ ++ + YYP + + N PWG
Sbjct: 173 DLKGVGITSIHSVYSYIRQASSISQDYYPERMGKFYVINAPWG 215
>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 371 PRGRDVDGSLLLVFKSK 421
P RDV GSL+ +FKSK
Sbjct: 370 PTDRDVVGSLISIFKSK 386
>SPBC16A3.06 |||tRNA specific adenosine deaminase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 161 KENDVDFHPADLXRTXDXKYLKRVLAHCEKDAKQAADMLW 280
K+N FHP + T + R L EK A ++W
Sbjct: 261 KDNPYYFHPFTVLETDENFLYSRPLNQAEKTATSTNVLIW 300
>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 241 MGQHPLQVLXIXRSL*VGRVEVYIVFFETILK 146
+G + + R+L VGR +V +V ETI+K
Sbjct: 216 LGSDAVLATSVWRNLFVGRPDVDLVILETIVK 247
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 597 LNRVIKYLISSMSMLLRPVPSISKNMXIFLP 505
LN I Y++ L+P PS+++ +LP
Sbjct: 136 LNDEINYILDDQDACLKPKPSVAQLFLSWLP 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,660,228
Number of Sequences: 5004
Number of extensions: 53157
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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