Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_N06
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0770 - 31623415-31623960,31624467-31624709,31624808-316249... 33 0.26
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 30 1.4
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 29 2.4
02_05_0775 + 31681720-31681953,31682106-31682246,31682357-316824... 29 4.2
02_02_0675 + 12845980-12846111,12846211-12846363,12846954-128471... 29 4.2
12_02_0245 - 16290734-16291465 28 5.6
12_01_0578 - 4731024-4731134,4731200-4731337,4732438-4732500,473... 28 5.6
12_01_0450 - 3552701-3552865,3552971-3553195,3553306-3553473,355... 28 5.6
10_08_0894 - 21365629-21365766,21365849-21365950,21366042-213662... 28 5.6
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360... 28 5.6
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347... 28 7.4
08_02_0637 + 19571677-19571943,19572036-19572176,19572260-195723... 28 7.4
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 28 7.4
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 28 7.4
>02_05_0770 -
31623415-31623960,31624467-31624709,31624808-31624906,
31625058-31625234,31625441-31625512
Length = 378
Score = 32.7 bits (71), Expect = 0.26
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 2/144 (1%)
Frame = +2
Query: 221 LKRVLAHCEKDAKQAADMLWDILTXRKNVGASNINEDNIRMDYVKEGVFFPRGRDVDGSL 400
+ R L + K+A ML L R I D I + ++ D G
Sbjct: 48 IARYLVARNWEVKKATKMLKKTLKWRSEYKPDEIRWDEIANEAATGKIYRTDYFDKSGRS 107
Query: 401 LLVFKSKMHIKGQRDYDELKKIMIYWFDXVXRE--ENGKKIXMFFDMDGTGLSNMDMELI 574
+LV + ++ + + ++Y + + ++ D G LSN+ + +
Sbjct: 108 ILVMRPG--VQNTKKAKGQIRYLVYCMENAILNLPHDQSQMVWLIDFAGFSLSNISLHVT 165
Query: 575 KYLITLFKCYYPYFLNYIIIYNMP 646
K + + +YP L I+YN P
Sbjct: 166 KLTADVLQGHYPERLGVAILYNAP 189
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 443 DYDELKKIMIYWFDXVXREENGKKIXMFFDMDGT 544
D+ E + WF+ V GK+I +F D DGT
Sbjct: 77 DWMEKHPSALAWFESVAAAAKGKEIVVFLDYDGT 110
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 367 LPAGQRRGWQSPPRLQIQNAHQRPKGL*RVEKNH 468
LPA R + PP +Q+Q HQ+P G+ V H
Sbjct: 102 LPAVAGRRFFPPPAMQMQYYHQQPDGVAMVGSGH 135
>02_05_0775 +
31681720-31681953,31682106-31682246,31682357-31682428,
31682513-31682590,31682683-31682736,31682862-31682963,
31683112-31683189,31683322-31683391,31683592-31683662,
31683826-31683918,31684029-31684109
Length = 357
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 479 FDXVXREENGKKIXMFFDMDGT 544
F+ + + GKKI MF D DGT
Sbjct: 88 FEEIAAKSRGKKIVMFMDYDGT 109
>02_02_0675 +
12845980-12846111,12846211-12846363,12846954-12847100,
12847372-12847656
Length = 238
Score = 28.7 bits (61), Expect = 4.2
Identities = 31/144 (21%), Positives = 64/144 (44%), Gaps = 15/144 (10%)
Frame = +2
Query: 248 KDAKQAADMLWDILTX----RKNVGASNINEDNIRMDYVKEGVFFPRGRDVDGSLLLVFK 415
KD K + D LT R++ S ++E++++ Y + D+ G +LV
Sbjct: 78 KDRKLSVDETVSKLTKAIKWRQDFQVSELSEESVKGLYQTGKAYVHDSFDIYGRPVLVVV 137
Query: 416 SKMHIKG---------QRDYDELKKIMIYWFDX-VXREENG-KKIXMFFDMDGTGLSNMD 562
+ H ++D E +K+ + + + R G + I FD+ G + N D
Sbjct: 138 ASKHFPSLCYWSTQLQKQDPVENEKLCAFLVEKALSRLPLGTENILGIFDLRGFQVENGD 197
Query: 563 MELIKYLITLFKCYYPYFLNYIII 634
++ +K+L++ +Y NY+++
Sbjct: 198 LQFLKFLVSCVHSFYA-IPNYVVV 220
>12_02_0245 - 16290734-16291465
Length = 243
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +2
Query: 131 DVRSIFENRLKENDVDFHPADLXRTXDXKYLKRVLAHCEKDAKQAADMLWDI-LTXRKNV 307
++R + +RL + + +HP + YLK + + +MLW + T + V
Sbjct: 64 ELRESYNDRLADTEYRYHPRQPQGSDRGSYLKPAGIENDASTRHLVEMLWAMDETRAEIV 123
Query: 308 GASNINEDNIR 340
A+ ED R
Sbjct: 124 TAAQDREDRNR 134
>12_01_0578 -
4731024-4731134,4731200-4731337,4732438-4732500,
4732596-4732667,4732751-4732891,4733011-4733126,
4733222-4733255,4734151-4734261
Length = 261
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 479 FDXVXREENGKKIXMFFDMDGT 544
FD + GKKI +F D DGT
Sbjct: 97 FDEITSNAQGKKIALFLDYDGT 118
>12_01_0450 -
3552701-3552865,3552971-3553195,3553306-3553473,
3554514-3554629,3554735-3554887,3554978-3555121,
3556667-3557276
Length = 526
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 434 GQRDYDELKKIMIYWFDXVXREENGKKIXMFFDMDGTGLSNMD 562
G DY E ++ + + REEN FFD DG+G +D
Sbjct: 404 GTIDYGEFLAATLH-MNKLEREENLVSAFTFFDKDGSGFITID 445
>10_08_0894 - 21365629-21365766,21365849-21365950,21366042-21366284,
21366685-21366813,21366999-21367103,21367196-21367387,
21367486-21367639,21368148-21368209,21368291-21368437,
21368517-21368564,21369091-21369228,21369305-21369451,
21370579-21370665,21370754-21370861,21370941-21371041,
21371870-21371996,21372820-21372936,21373029-21373106,
21373240-21373284,21373637-21373756,21373838-21373964,
21374033-21374253,21374347-21374529,21374772-21374924,
21375051-21375146,21375226-21375331,21375410-21375492,
21375576-21375728,21375819-21376058,21376367-21376414,
21376782-21376928,21377007-21377115,21377200-21377345,
21377715-21377809,21377944-21378049,21378177-21378368,
21378456-21378686,21378772-21378866,21379426-21379529,
21380040-21380284,21380300-21380347,21380376-21380480,
21380630-21380767,21381458-21381649,21381738-21381914,
21382001-21382129,21382203-21382316,21382407-21382746,
21382836-21383064,21383155-21383455,21384311-21384358,
21387963-21388355
Length = 2493
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 521 MFFDMDGTGLSNMDMELIKYLITLFKCYYPYFLNYIII 634
+FF ++ SNM+ + ++ L + YYP+F Y+++
Sbjct: 1104 IFFMINNISTSNMEAKAREFNEVLQEQYYPWFAQYMVM 1141
>03_01_0465 +
3598815-3598972,3599949-3600711,3601073-3601159,
3601263-3601346,3601428-3601514,3601608-3601694,
3602239-3602292,3602380-3602471,3602564-3602678,
3602763-3602913,3603010-3603155
Length = 607
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/91 (23%), Positives = 37/91 (40%)
Frame = +2
Query: 188 ADLXRTXDXKYLKRVLAHCEKDAKQAADMLWDILTXRKNVGASNINEDNIRMDYVKEGVF 367
A R ++K+ K A+ D + I ++ V + + +DNI + V E F
Sbjct: 349 ATFFRRDKFSHVKKYEVEFNKAAQSLTDAI--IPAAQRKVALTRLIKDNIALIAVLEAKF 406
Query: 368 FPRGRDVDGSLLLVFKSKMHIKGQRDYDELK 460
G D L+ + HI +D ++K
Sbjct: 407 GSHGADNPSKRQLLCVANTHINVHQDLKDVK 437
>11_01_0449 -
3473662-3475049,3476026-3476128,3476215-3476439,
3476689-3476856,3477414-3477529,3477640-3477792,
3477879-3478022,3478980-3479583
Length = 966
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 434 GQRDYDELKKIMIYWFDXVXREENGKKIXMFFDMDGTGLSNMD 562
G DY E ++ + + REEN FFD DG+G +D
Sbjct: 402 GTIDYGEFIAATLH-MNKLEREENLVSAFSFFDKDGSGFITID 443
>08_02_0637 +
19571677-19571943,19572036-19572176,19572260-19572331,
19572425-19572523,19572615-19572668,19572804-19572905,
19573169-19573246,19573449-19573518,19573644-19573807,
19574629-19574694
Length = 370
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 479 FDXVXREENGKKIXMFFDMDGT 544
F+ + GKKI MF D DGT
Sbjct: 99 FEQIVAASKGKKIVMFLDYDGT 120
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +2
Query: 2 DNARSYFPXYKTN*HLINATSTTISCLSSTDIIVLSVIMATAADVRSIFE 151
D+ RSY N HLIN + + C S D+ IM A V FE
Sbjct: 270 DSLRSYKDKRAGNGHLINLIDSPVCCNLSNDVQPALCIMDGALVVVDSFE 319
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/109 (20%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Frame = +2
Query: 329 DNIRMDYVKEGVFFPRGRDVDGSLLLVFKSKMHIKGQRDYDELKKIMIYWFDXVXR---E 499
++I +Y + D G +L+ +K IKG+ E K +Y + + +
Sbjct: 41 ESICWEYEGRRAYIADYLDAKGRSILI--TKPTIKGRVSGKEQIKHFVYLLESLAMNSAD 98
Query: 500 ENGKKIXMFFDMDGTGLSNMDMELIKYLITLFKCYYPYFLNYIIIYNMP 646
E + + D+ G +S+ + + + + + YYP + I+ N P
Sbjct: 99 EQEEHVTWLIDLRGWSISSTPLSTSRESMHIVQNYYPGIIAVAILSNTP 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,507,012
Number of Sequences: 37544
Number of extensions: 368297
Number of successful extensions: 882
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -