Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_N06
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.1  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   4.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   4.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 201 RXKSAGWKSTSFSLRRFSKMLRTSAAVAMITD--KTIISVEDKQDIVVE 61
           R  S  W+  SF + +  ++ RTS A    T+   T+ S+   Q  V++
Sbjct: 701 RSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVIQ 749



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 506 HSLLXRPYRTSIS*FFSTRHS 444
           HS    P  T IS  F+TRH+
Sbjct: 295 HSAYKAPEETIISSVFTTRHN 315


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 599 CYYPYFLNYIII 634
           C+ P+FL Y+I+
Sbjct: 339 CWLPFFLMYVIV 350


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 599 CYYPYFLNYIII 634
           C+ P+FL Y+I+
Sbjct: 339 CWLPFFLMYVIV 350


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 347 YVKEGVFFPRGRDVDGSLLLVFKSKMHIK 433
           +  +G  F  G D DG  L++   ++HI+
Sbjct: 140 HTDQGEEFVPGDDYDGKYLVLPSGELHIR 168


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 599 CYYPYFLNYIII 634
           C+ P+FL Y+I+
Sbjct: 339 CWLPFFLMYVIV 350


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 506 HSLLXRPYRTSIS*FFSTRHS 444
           HS    P  T IS  F+TRH+
Sbjct: 1   HSAYKAPEETIISSVFTTRHN 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,092
Number of Sequences: 438
Number of extensions: 3770
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)