Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_N04
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   3.1  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    26   5.4  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.4  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   7.2  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   7.2  
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb...    25   7.2  
SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr...    25   9.5  

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 345 CQFRLLLPYCSKKLKWEILFDVSIPWFAPDFKFDDESFL 461
           C FR+LL Y  ++  WE+L  +    F     +D   F+
Sbjct: 604 CFFRMLLIYFKREFDWEVLLKLWDVLFTNYLSYDYHIFV 642


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = +3

Query: 246 RPYVQTLCEELKLGLCKTKIXVERISCLPDGEECQFRLLLPYCSKKLKWEIL 401
           RP  +      K       I     + LP GE+   ++  P  +K++ W++L
Sbjct: 171 RPVEEVFASIEKRAAASASIAQVHRAVLPSGEKVAVKIQKPDVAKQMSWDLL 222


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 396 FPISIS*NNKVIADGIGIPLHQVNKIFFQH 307
           F + +   +K+    + IPLHQ   +F  H
Sbjct: 415 FAVPLKEEHKIFLSKVLIPLHQTKSVFLYH 444


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 450 ESFLISXDENFLEXKVPSLAKWNES 524
           E  L   DEN L     +L+KWNE+
Sbjct: 18  EIILAHSDENLLSRTKNNLSKWNEN 42


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 360 LLPYCSKKLKWEILFDVSIPWF 425
           L P   K L +++ F+V IPWF
Sbjct: 197 LNPRLGKLLDFKMFFEVRIPWF 218


>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 200

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 522 SDPTALSNVIFELVNLYKSHXIXKLSXDDSSRAYFEYSALLGD 650
           SDP A+  +     N  KS     ++    +R Y E S+L GD
Sbjct: 126 SDPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGD 168


>SPBC14C8.13 |||SRR1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 372 CSKKLKWEILFDVSIPWFAPDFKFDDESFLISXDENFLEXKVPS 503
           C+K     +LF    P F   + F+D SF     ++F+E K PS
Sbjct: 199 CTKNYYTRLLF----PEFPNVYAFNDLSFHFHDAQSFVEKKQPS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,028
Number of Sequences: 5004
Number of extensions: 46074
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)