Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_N04
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
           protein F10C1.5 protein.
          Length = 280

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 430 GANHGIDTSNNISHFNFLEQ*GNSRRNWHSSPSGKQDILST 308
           G NH   T+NN ++     +    +R+  SSP+G + ++ST
Sbjct: 118 GKNHASPTTNNNNNTEEKYEDSQGQRSSPSSPTGSETVVST 158


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +3

Query: 333 DGEECQFRLLLPYCSKKLKWEILFDVSIPWFAPDFKFDDESFLISXDENFL 485
           D EEC F    P    KL   +  D+  PW+AP+  F + + L      FL
Sbjct: 527 DNEECTF----PSYMCKLSMNLHSDLYPPWYAPNDVFTNFAILFCLSLTFL 573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,643,123
Number of Sequences: 27780
Number of extensions: 244780
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)