Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M22
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     28   1.4  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.1  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   4.1  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    26   4.1  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    25   9.5  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    25   9.5  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +2

Query: 113 RKSLINHMKDGELVGRHQTRENPTTEIRE 199
           R++LI++ K  +L+ ++ +REN  T++RE
Sbjct: 395 REALIHYAKAMKLLSKYNSRENMITKLRE 423


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -2

Query: 639 QXGLSFVQITHPP--SPTITASPLKYKVKASTTLE 541
           Q GL+  +IT+    SP  T +P+K  VKA  TLE
Sbjct: 367 QYGLALPKITNSNLISPNQTFNPVKSSVKALPTLE 401


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 5   VLFQTSTRVHVLFHPNILFSKLV 73
           +LFQT    H L+H +I + K+V
Sbjct: 498 ILFQTENAPHSLYHMDIEYGKIV 520


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +1

Query: 151 GWTTSNA*ESHDRNSGTSIQWSLPRITXRTVTSAAKRG 264
           G T SN+  S D+    SI+  LPR+  R  TS  KRG
Sbjct: 444 GRTRSNSKTSSDQ----SIKRPLPRVVQRQKTSLGKRG 477


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 387 HFRLR*GNLKLQTYLLMAVIVFLVMSDVTP 298
           H RL    L    Y +MAV+VFLV+ D  P
Sbjct: 37  HSRLAKAFLCRLVYFIMAVMVFLVIFDGFP 66


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 403 EFLLNSFSIKMRKFEATNISVNGG-HSFSCNVRRNSSVALTKSLLSCRLVL 254
           + L + F +  RK +  +I++N    SF C  R+N+ V L   LL  R+++
Sbjct: 136 DVLRDFFHVLTRKEQDVHIALNINLKSFLCEWRQNALVLLKVLLLGKRILV 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,619
Number of Sequences: 5004
Number of extensions: 54626
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)