Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M22
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   7.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   7.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   7.9  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +3

Query: 264 RHDNK----DFVKATEELRRTLQEKL*PPLTDMFVASNFLILIENEFNKNSLPLSN 419
           R+DN     DF+    EL++  Q+     LTD  +A+   +     F  +S  +SN
Sbjct: 260 RNDNNIVRPDFINMLMELQKNPQKLENIKLTDSLIAAQAFVFFLAGFETSSTTMSN 315


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 418 FDKGKEFLLNSFSIKMRKFEATNISVNGGHSF 323
           F  GKE L  S S+  R ++      NG HS+
Sbjct: 68  FQGGKETLALSISMLARIWKPDTYFYNGKHSY 99


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/64 (20%), Positives = 27/64 (42%)
 Frame = +3

Query: 138 KMESWLDDIKRVRIPRPKFGNKYPVEPPKDYLXNSDLSGKTRRHDNKDFVKATEELRRTL 317
           K+   +DD+     P+ + G   P +  K     + L    +  DNK  +K     +  +
Sbjct: 8   KVHFGVDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSKKALM 67

Query: 318 QEKL 329
           +E++
Sbjct: 68  KERI 71


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/64 (20%), Positives = 27/64 (42%)
 Frame = +3

Query: 138 KMESWLDDIKRVRIPRPKFGNKYPVEPPKDYLXNSDLSGKTRRHDNKDFVKATEELRRTL 317
           K+   +DD+     P+ + G   P +  K     + L    +  DNK  +K     +  +
Sbjct: 8   KVHFGVDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSKKALM 67

Query: 318 QEKL 329
           +E++
Sbjct: 68  KERI 71


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/64 (20%), Positives = 27/64 (42%)
 Frame = +3

Query: 138 KMESWLDDIKRVRIPRPKFGNKYPVEPPKDYLXNSDLSGKTRRHDNKDFVKATEELRRTL 317
           K+   +DD+     P+ + G   P +  K     + L    +  DNK  +K     +  +
Sbjct: 8   KVHFGVDDVSLYGTPKEEPGPGLPGQEVKQSFLKNQLQALFQPTDNKLAMKLFGSKKALM 67

Query: 318 QEKL 329
           +E++
Sbjct: 68  KERI 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,107
Number of Sequences: 438
Number of extensions: 3998
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)