Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M21
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    29   0.58 
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.1  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   3.1  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.1  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   5.4  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   5.4  

>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 16  IVIRNNNTKIIQILFSSNTNDIPDFECFNT 105
           +V   NN+ ++++L+ +    +P+ + FNT
Sbjct: 226 LVTTENNSDVLEVLYQATNGQLPNLDLFNT 255


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 490 VVALNEDVQGIQVDFDDGHCPTWRNQLLAFNNINLAVSGKLQGAPLTITTCPVL 651
           V+ +   +Q +++  D    P++R   + FN  N +++  L   P  IT  PV+
Sbjct: 73  VLEVENRLQNLKIVKDLRQNPSFRELRMPFNRSNHSLTNNLLSGPGRITVPPVI 126


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 517 GIQVDFDDGHCPTWRNQLLAFNNINL 594
           G Q  F+    P WR  L+ FN I++
Sbjct: 184 GFQFVFESAIVPNWRKGLITFNKISV 209


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = -3

Query: 461 SPRXKCLFCNLIGKGAIFQLLSXRSGEFLKSIKGSFFISTARRFL 327
           SP  KCLF NL+     F L   +     K +  S     ARRFL
Sbjct: 456 SPAQKCLFSNLLTATRKFCLERQKDDVTFKVLLQSSKAPIARRFL 500


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 559 RNQLLAFNNINLAVSGKLQGAPLTI 633
           RN L  F+N+   VSG L+  PLT+
Sbjct: 370 RNDLCKFSNLFSGVSGHLKIQPLTL 394


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 262  VLEFIAXLHRNFDEKIXLLYXNRKRRAVEIKNDPFIDFKNSPER 393
            + EF+  LHR F++ I   Y  +  + V    +P I   N P R
Sbjct: 1012 ITEFVKELHRCFEDTISFFYNKKNPKVVTGVFNPRI-LANRPYR 1054


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,586
Number of Sequences: 5004
Number of extensions: 45241
Number of successful extensions: 100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)