Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M21
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0310 - 24301274-24301945,24302035-24302365,24302629-243029...    48   5e-06
02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590     29   4.2  
08_02_0473 + 17586507-17587004,17587146-17588145,17588314-175885...    27   9.8  
04_04_1553 - 34363848-34366058,34369087-34370451                       27   9.8  
04_04_1550 - 34332948-34335986                                         27   9.8  

>04_04_0310 -
           24301274-24301945,24302035-24302365,24302629-24302954,
           24303039-24303413
          Length = 567

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
 Frame = +1

Query: 247 IXSSEVLEFIAXLHRNFDEKIXLLYXNRKRRAVEIKND----PFIDFKNSPERXDKSWKI 414
           I + + L F+A L R F   +   Y   +RR  + + D    P  D    P R    W  
Sbjct: 32  ILTRDSLAFVAGLQREFRGAVR--YAMERRREAQRRYDAGELPRFDPATRPVREAGGWAC 89

Query: 415 APLPIRLQNRHLXLGDVSASNTAHFVVALNEDVQGIQVDFDDGHCPTWRNQLLAFNNINL 594
           AP+P  + +R + +    A      + ALN   +    DF+D   PTW N +    N+  
Sbjct: 90  APVPPAIADRTVEITG-PAEPRKMVINALNSGAKVFMADFEDALSPTWENLMRGQVNLRD 148

Query: 595 AVSGKL 612
           AV+G +
Sbjct: 149 AVAGTI 154


>02_05_0865 - 32329430-32329642,32329735-32330062,32330136-32330590
          Length = 331

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 448 LXLGDVSASNTAHFVVALNEDVQGIQVDFDDGH 546
           L LG    ++ + F V +  DVQG+QV F DGH
Sbjct: 210 LTLGVAPHTDMSTFTVLVPNDVQGLQV-FKDGH 241


>08_02_0473 +
           17586507-17587004,17587146-17588145,17588314-17588566,
           17588647-17588757,17588845-17588905,17588994-17589086,
           17589164-17589349
          Length = 733

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 358 DPFIDFKNSPERXDKSWKIAPL 423
           D F+ FKNSPE  ++S K + L
Sbjct: 36  DDFLTFKNSPEEVERSKKFSEL 57


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 538 DGHCPTWRNQLLAFNNINLAVSGKLQGA-PLTITTCPVL 651
           +G+ P    +L +  ++NLA S +L G  PL++++CP+L
Sbjct: 724 NGNIPDVFGKLRSLESLNLA-SNQLNGTLPLSLSSCPML 761


>04_04_1550 - 34332948-34335986
          Length = 1012

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = +1

Query: 538 DGHCPTWRNQLLAFNNINLAVSGKLQGA-PLTITTCPVL 651
           +G+ P    +L +  ++NLA S +L G  PL++++CP+L
Sbjct: 256 NGNIPDVFGKLRSLESLNLA-SNQLNGTLPLSLSSCPML 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,782,276
Number of Sequences: 37544
Number of extensions: 261298
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)