Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M16
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    26   4.9  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    25   6.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   6.4  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    25   8.5  
SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual    25   8.5  

>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 415 TLPQLESPTSQHPSTNKGDQRIN 483
           TLPQ  +  S   STNKGD  +N
Sbjct: 542 TLPQKRNAHSMLSSTNKGDVALN 564


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 63  KKKRKLAFCPSL*VWEIEYSSVR 131
           KK+  L F PS  VW+ EY + R
Sbjct: 363 KKELNLNFLPSFDVWDREYYTAR 385


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 156 KFLLHCNHSIILRFSSNIPFLLFSKQN*YYGFSKWQTRNFTQATRFTANN 305
           KFL   N+   +   SN P    S Q  ++G  K   +N  +AT   +N+
Sbjct: 133 KFLTRKNNPSSMSLVSNYPLDAISSQQKFHGNDKTLEKNSAKATINKSNS 182


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 177 DCSEAKTLYRFLRKLRGRRS 118
           DC+ AKTL++ +RKL   ++
Sbjct: 209 DCTTAKTLFKQVRKLENTKN 228


>SPBC902.03 |||Spo7 homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 39  KMYFLCKIKKKRKLAFCPSL*VWEIEYSSVRAIFVKIGTKFLLHCNHSIILRFSSNIPFL 218
           K Y   ++++++ +AF  SL VW   Y   R +F +I    L+   + + L     +  L
Sbjct: 24  KTYLQLQVRRQKYMAFYVSLLVWNF-YFGYR-VFYRISKYSLIDLTYKLCL-LCGIVTLL 80

Query: 219 LF 224
           LF
Sbjct: 81  LF 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,953
Number of Sequences: 5004
Number of extensions: 50472
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)