Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_M16
(602 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 30 1.5
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 30 1.5
AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like nucl... 28 5.9
AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical ... 28 5.9
AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical ... 28 5.9
Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical pr... 27 7.8
AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical... 27 7.8
AF016451-2|AAB65997.2| 290|Caenorhabditis elegans Serpentine re... 27 7.8
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 199 HRTFHSFSFPNKISTMDSVSGKQETSHKPQDSL 297
H T S SFPN +++ S+ + H+P SL
Sbjct: 715 HSTHISVSFPNTVTSASSILSNSSSPHQPTPSL 747
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 199 HRTFHSFSFPNKISTMDSVSGKQETSHKPQDSL 297
H T S SFPN +++ S+ + H+P SL
Sbjct: 715 HSTHISVSFPNTVTSASSILSNSSSPHQPTPSL 747
>AF162674-1|AAF80462.1| 575|Caenorhabditis elegans CNT-like
nucleoside transporter protein.
Length = 575
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -2
Query: 313 NFQLFAVNLVACVKFLVCHLLNP*Y*FCLEKRRNGMFDENRRIIE*LQ*SKNFVPIFTKI 134
N+Q A + + F +C+LLN K ++D+ R +E + K FVP+ KI
Sbjct: 70 NYQKAAPLIYVTLFFWICYLLNL---IVGTKTFRAVYDDVGRKLEEITEQKKFVPLSLKI 126
Query: 133 A 131
A
Sbjct: 127 A 127
>AF016413-4|AAM29683.1| 454|Caenorhabditis elegans Hypothetical
protein F27E11.2b protein.
Length = 454
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -2
Query: 313 NFQLFAVNLVACVKFLVCHLLNP*Y*FCLEKRRNGMFDENRRIIE*LQ*SKNFVPIFTKI 134
N+Q A + + F +C+LLN K ++D+ R +E + K FVP+ KI
Sbjct: 70 NYQKAAPLIYVTLFFWICYLLNL---IVGTKTFRAVYDDVGRKLEEITEQKKFVPLSLKI 126
Query: 133 A 131
A
Sbjct: 127 A 127
>AF016413-3|AAB65256.3| 555|Caenorhabditis elegans Hypothetical
protein F27E11.2a protein.
Length = 555
Score = 27.9 bits (59), Expect = 5.9
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -2
Query: 313 NFQLFAVNLVACVKFLVCHLLNP*Y*FCLEKRRNGMFDENRRIIE*LQ*SKNFVPIFTKI 134
N+Q A + + F +C+LLN K ++D+ R +E + K FVP+ KI
Sbjct: 70 NYQKAAPLIYVTLFFWICYLLNL---IVGTKTFRAVYDDVGRKLEEITEQKKFVPLSLKI 126
Query: 133 A 131
A
Sbjct: 127 A 127
>Z82068-6|CAB04901.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 331 DFVMPSVLELVQERAHLQELDRELQXLHTLPQLESPTSQ 447
DF+ V E+V+E L E ++ + LH L PT++
Sbjct: 519 DFIEDPVTEVVEEVTELPEDRKDPEALHELENHNDPTAE 557
>Z69664-6|CAA93513.2| 1159|Caenorhabditis elegans Hypothetical protein
K04D7.4 protein.
Length = 1159
Score = 27.5 bits (58), Expect = 7.8
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Frame = +2
Query: 365 RRELTSKSW--IEN-SXLYTHYHNWNLLLL------SIPAPTKGTSELILSMLYS 502
R +L + W IEN YH+ LL+L S+P+PT TS L LS+L++
Sbjct: 1041 RADLDTDFWREIENVQKQRITYHDAPLLILAHKYPPSVPSPTDSTSTLSLSILFN 1095
>AL032655-10|CAA21727.1| 1829|Caenorhabditis elegans Hypothetical
protein Y6B3B.1 protein.
Length = 1829
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 331 DFVMPSVLELVQERAHLQELDRELQXLHTLPQLESPTSQ 447
DF+ V E+V+E L E ++ + LH L PT++
Sbjct: 519 DFIEDPVTEVVEEVTELPEDRKDPEALHELENHNDPTAE 557
>AF016451-2|AAB65997.2| 290|Caenorhabditis elegans Serpentine
receptor, class x protein39 protein.
Length = 290
Score = 27.5 bits (58), Expect = 7.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -3
Query: 174 CSEAKTLYRFLRKLRGRRSIQFPTLIEKGRMLISVFFLFCI 52
C A T + F+ L ++ P L RM+ SV F FCI
Sbjct: 86 CYSASTTFHFMISLNRILAVYKPMLY---RMMFSVLFTFCI 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,756,640
Number of Sequences: 27780
Number of extensions: 278932
Number of successful extensions: 738
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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