Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_M15
(442 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 60 3e-08
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 50 2e-05
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 46 3e-04
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 46 5e-04
UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n... 43 0.003
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 41 0.014
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 40 0.018
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 38 0.096
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 37 0.17
UniRef50_A4ZYV8 Cluster: VirD4-like protein; n=1; Bacillus subti... 37 0.22
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 35 0.67
UniRef50_Q0LIQ0 Cluster: Putative uncharacterized protein; n=4; ... 34 1.2
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 34 1.2
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 34 1.2
UniRef50_A7IXQ7 Cluster: Putative uncharacterized protein b732L;... 33 2.7
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 32 4.7
UniRef50_Q4JUB6 Cluster: Putative transcriptional regulator; n=1... 32 6.3
UniRef50_Q4FPU6 Cluster: ABC efflux transporter, fused inner mem... 32 6.3
UniRef50_Q1DCK6 Cluster: Putative uncharacterized protein; n=2; ... 32 6.3
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 31 8.3
UniRef50_Q76K51 Cluster: O-acetyl-L-homoserine sulfhydrylase; n=... 31 8.3
UniRef50_Q6BJE4 Cluster: Similar to CA1748|IPF8257 Candida albic... 31 8.3
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 59.7 bits (138), Expect = 3e-08
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +3
Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
+ QCTQV+VEF+ +TSR IIRNVKGPVR+GD+LT
Sbjct: 24 QGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
Score = 35.1 bits (77), Expect = 0.67
Identities = 23/47 (48%), Positives = 27/47 (57%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 217
+P LARV KVLGRTGSQG ++ RV + D S R GP R
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVEFMDDTSRSIIRNVKGPVR 51
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 50.0 bits (114), Expect = 2e-05
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = +3
Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 227
R TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23 RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55
Score = 34.7 bits (76), Expect = 0.89
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +2
Query: 80 PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 217
P LA+V+KVLGRTGS+G V ++ RV + D S R GP R
Sbjct: 7 PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPVR 50
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 46.4 bits (105), Expect = 3e-04
Identities = 22/34 (64%), Positives = 28/34 (82%)
Frame = +3
Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGPVRDGDILT 230
R Q TQV+V+F ++ R I+RNVKGPVR+GDILT
Sbjct: 20 RGQVTQVRVKFT-DSDRYIMRNVKGPVREGDILT 52
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 45.6 bits (103), Expect = 5e-04
Identities = 19/27 (70%), Positives = 24/27 (88%)
Frame = +3
Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGPV 209
+ QCTQV+V+F+ +TSR IIRNVKGPV
Sbjct: 24 QGQCTQVRVKFMDDTSRSIIRNVKGPV 50
Score = 34.3 bits (75), Expect = 1.2
Identities = 22/45 (48%), Positives = 26/45 (57%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP 211
+P LARV KVLGRTGSQG ++ RV + D S R GP
Sbjct: 7 QPIKLARVTKVLGRTGSQG--QCTQVRVKFMDDTSRSIIRNVKGP 49
>UniRef50_UPI0000EC9EE1 Cluster: UPI0000EC9EE1 related cluster; n=1;
Gallus gallus|Rep: UPI0000EC9EE1 UniRef100 entry -
Gallus gallus
Length = 112
Score = 43.2 bits (97), Expect = 0.003
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -3
Query: 266 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTL----GPENQYGRV 108
+QPP R ++ EDVS+ R HV DD A + +EL HLS L GP G +
Sbjct: 56 AQPPRLALRLEQGEDVSLPHRPLHVADDGAARVVHELHAHLSALPLGAGPAQHLGHL 112
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 40.7 bits (91), Expect = 0.014
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 78 NPTFLLVS*KYSAVLVLRAQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 227
N F++V+ K + R Q TQV+V+ I + +IRN+KGPVR GDI+
Sbjct: 7 NSEFVIVT-KILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVRIGDIV 55
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 40.3 bits (90), Expect = 0.018
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +3
Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGP 206
R TQV+VEF+ +TSR IIRNVKGP
Sbjct: 23 RGGVTQVRVEFMDDTSRSIIRNVKGP 48
Score = 33.1 bits (72), Expect = 2.7
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +2
Query: 77 KPNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*RRHP 226
+P L +V +VLGRTGS+G V ++ RV + D S R GP R P
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPGMRFP 53
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 37.9 bits (84), Expect = 0.096
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +3
Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGP 206
R TQV+VEF+ + SR IIRNVKGP
Sbjct: 23 RGGVTQVRVEFMDDQSRSIIRNVKGP 48
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 37.1 bits (82), Expect = 0.17
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 126 LRAQCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 227
+ + TQVKV + + R I RNVKGPVR+GDIL
Sbjct: 26 MAGEVTQVKVRILEGPDKGRIITRNVKGPVREGDIL 61
>UniRef50_A4ZYV8 Cluster: VirD4-like protein; n=1; Bacillus
subtilis|Rep: VirD4-like protein - Bacillus subtilis
Length = 796
Score = 36.7 bits (81), Expect = 0.22
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = -3
Query: 245 FRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLGPENQYGRVLSRH 96
F FKKSE SV +RS +P++LT+ PNE + T +N GR + H
Sbjct: 569 FSFKKSETESVRERSLMLPEELTSIKPNETVVFRITKREDNN-GRGIVSH 617
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 35.1 bits (77), Expect = 0.67
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Frame = +3
Query: 129 RAQCTQVKVEFIGE-----TSRQIIRNVKGPVRDGDILT 230
R TQV+V + E +R I+RNVKGP ++GD+L+
Sbjct: 53 RGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKEGDMLS 91
>UniRef50_Q0LIQ0 Cluster: Putative uncharacterized protein; n=4;
Herpetosiphon aurantiacus ATCC 23779|Rep: Putative
uncharacterized protein - Herpetosiphon aurantiacus ATCC
23779
Length = 312
Score = 34.3 bits (75), Expect = 1.2
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -3
Query: 182 LTAGLPNELDLHLSTLGPENQYGRVLSRHEQERWVYPFWLVISSVN 45
L GL N ++LH+ L + GR+LSRH + W +PF + I +VN
Sbjct: 5 LAIGL-NPIELHILLLVA--RLGRLLSRHLRTAWGHPFTVTIQTVN 47
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 34.3 bits (75), Expect = 1.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGPVRDGDI 224
R T+V+V+ + + Q +R VKGPVR GD+
Sbjct: 19 RGILTEVRVQLVDQPKMQFMRTVKGPVRLGDV 50
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 34.3 bits (75), Expect = 1.2
Identities = 15/30 (50%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Frame = +3
Query: 144 QVKVEFIG--ETSRQIIRNVKGPVRDGDIL 227
QV+ + +G +T R ++RNVKGPV+ GDI+
Sbjct: 30 QVRCKILGGKDTGRVLVRNVKGPVKVGDII 59
>UniRef50_A7IXQ7 Cluster: Putative uncharacterized protein b732L;
n=2; Chlorovirus|Rep: Putative uncharacterized protein
b732L - Paramecium bursaria Chlorella virus NY2A
(PBCV-NY2A)
Length = 76
Score = 33.1 bits (72), Expect = 2.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 104 KVLGRTGSQGPVYSSEGRVHWGDQPSDHQERER 202
K+ R G +S + R++W +PSD Q+R R
Sbjct: 7 KISSRLSESGREHSQQRRIYWASRPSDMQQRRR 39
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 32.3 bits (70), Expect = 4.7
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +3
Query: 135 QCTQVKVEFIG--ETSRQIIRNVKGPVRDGDIL 227
+ TQV+V + + R + RNVKGPVR GDIL
Sbjct: 35 EVTQVRVRVLEGRDKGRILTRNVKGPVRVGDIL 67
>UniRef50_Q4JUB6 Cluster: Putative transcriptional regulator; n=1;
Corynebacterium jeikeium K411|Rep: Putative
transcriptional regulator - Corynebacterium jeikeium
(strain K411)
Length = 258
Score = 31.9 bits (69), Expect = 6.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 122 GSQGPVYSSEGRVHWGDQPSDHQERER 202
G Q P Y E R WGD P Q +E+
Sbjct: 128 GEQMPAYQEEARERWGDTPEYQQSQEK 154
>UniRef50_Q4FPU6 Cluster: ABC efflux transporter, fused inner
membrane subunits; n=3; Psychrobacter|Rep: ABC efflux
transporter, fused inner membrane subunits -
Psychrobacter arcticum
Length = 882
Score = 31.9 bits (69), Expect = 6.3
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -3
Query: 236 KKSEDVSVTDRSFHV---PDDLTAGLPNELDLHLSTLGPENQYGRVLSRHEQERWVYPFW 66
K ED+S TD + D + G+ +L STLG + + LSR +RW+YP
Sbjct: 4 KNVEDISSTDNTDTTMARESDASGGIVRQL--LTSTLGLQGLGAQALSRSWWQRWIYPVL 61
Query: 65 LVISSVNTINT 33
+++ ++ T
Sbjct: 62 FLLTLTLSLAT 72
>UniRef50_Q1DCK6 Cluster: Putative uncharacterized protein; n=2;
Cystobacterineae|Rep: Putative uncharacterized protein -
Myxococcus xanthus (strain DK 1622)
Length = 309
Score = 31.9 bits (69), Expect = 6.3
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 245 FRFKKSEDVSVTDRSFHVPDDLTAGLPN 162
FR + ED+ VTD SF P D A +PN
Sbjct: 199 FRLDRMEDILVTDVSFQPPADARADVPN 226
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 31.5 bits (68), Expect = 8.3
Identities = 17/28 (60%), Positives = 19/28 (67%)
Frame = -1
Query: 220 SPSRTGPFTFLMI*RLVSPMNSTFT*VH 137
SP RTGP TF M RLVS ++ST T H
Sbjct: 84 SPFRTGPLTFQMKERLVSFIDSTPTCAH 111
>UniRef50_Q76K51 Cluster: O-acetyl-L-homoserine sulfhydrylase; n=4;
Thermus|Rep: O-acetyl-L-homoserine sulfhydrylase -
Thermus thermophilus
Length = 412
Score = 31.5 bits (68), Expect = 8.3
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -2
Query: 225 GCLRHGPVLSRS**SDGWS--PQ*TRPSLEYTGP*EPVRPSTFTTRARTLGLSI 70
G + G VLSR ++ W PQ +P L+ P E +R F R RTLGLS+
Sbjct: 208 GSVLGGAVLSRE--TELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSL 259
>UniRef50_Q6BJE4 Cluster: Similar to CA1748|IPF8257 Candida albicans
IPF8257 of unknown function; n=1; Debaryomyces
hansenii|Rep: Similar to CA1748|IPF8257 Candida albicans
IPF8257 of unknown function - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 1115
Score = 31.5 bits (68), Expect = 8.3
Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Frame = -3
Query: 344 CKFNT*IYVDGTCEXXXXXXXXXXXLSQPPSFTFRFKKSEDVSVTD-RSFHVPDDLTAGL 168
C FN + D CE S+ F + + DV RS H DD +
Sbjct: 591 CSFNGTTFNDINCENSEDSGIDSGDSSKLEPIGFPSRAARDVIKEQFRSMHGDDDSDTDI 650
Query: 167 PNELDLHLSTLGPENQYGRVLSRHEQERWVYPFWLVISSVNTINTRAPK 21
+ + ST P+++ LSR+ ER + P I N+I PK
Sbjct: 651 ESAKYSNYSTTTPKSKSTPCLSRN--ERQLPPLPDKIDKTNSIKHPQPK 697
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 382,083,983
Number of Sequences: 1657284
Number of extensions: 6796005
Number of successful extensions: 15626
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15622
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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