Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M15
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    50   2e-07
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    50   2e-07
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    25   5.2  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    24   9.0  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    24   9.0  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    24   9.0  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +3

Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 227
           R   TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 34.7 bits (76), Expect = 0.006
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +2

Query: 80  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 217
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S    R   GP R
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPVR 50


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +3

Query: 129 RAQCTQVKVEFIGETSRQIIRNVKGPVRDGDIL 227
           R   TQV+VEF+ +TSR IIRNVKGPVR+ DIL
Sbjct: 23  RGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55



 Score = 34.7 bits (76), Expect = 0.006
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +2

Query: 80  PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERERTGP*R 217
           P  LA+V+KVLGRTGS+G V  ++ RV + D  S    R   GP R
Sbjct: 7   PVKLAKVIKVLGRTGSRGGV--TQVRVEFMDDTSRSIIRNVKGPVR 50


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 175 LVSPMNSTFT*VHWALRTSTAEYFHDTSKNVGFIHFGL*YRALIQL 38
           LV   NS  T   +    S   Y H TSKN  F   GL +   +QL
Sbjct: 191 LVYIQNSKATNKKYMATVSPIFYTHFTSKNYSFFSEGLWFTRWMQL 236


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 154 SSSLGRPAVRSSGT*KDRSVTETSSLFLNLNVKL 255
           ++S+  PAV SS T    S+T T S + + +V +
Sbjct: 203 TTSVNSPAVSSSETLTSVSITSTESAYTSSSVDI 236


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 179 TAGLPNELDLHLSTLGPE 126
           TAGLP  +  H++  GPE
Sbjct: 78  TAGLPESIISHMAMYGPE 95


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 182 LTAGLPNELDLHLSTLGPE 126
           L++GL    D H+S LGPE
Sbjct: 272 LSSGLGRVADNHISALGPE 290


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,552
Number of Sequences: 5004
Number of extensions: 28623
Number of successful extensions: 62
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)