Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_M15
(442 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 40 0.001
03_01_0468 - 3612079-3612197,3612679-3612850 38 0.005
05_03_0079 + 8212648-8212724,8212844-8212993,8213211-8213351,821... 28 3.8
01_03_0183 + 13543833-13544051,13544161-13544257,13545616-135457... 27 5.1
07_03_1727 + 29068348-29068571,29069473-29069514,29069593-290698... 27 6.7
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 27 6.7
10_06_0001 - 9366721-9367293 27 8.8
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656... 27 8.8
04_01_0105 + 1098551-1100392 27 8.8
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 39.5 bits (88), Expect = 0.001
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = -3
Query: 266 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLGP 129
+QPP R ++ EDV++TDR+ VP D T + EL L L P
Sbjct: 605 AQPPGLPLRLEQGEDVALTDRALDVPHDETVLVVEELHSDLGHLTP 650
>03_01_0468 - 3612079-3612197,3612679-3612850
Length = 96
Score = 37.5 bits (83), Expect = 0.005
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -3
Query: 266 SQPPSFTFRFKKSEDVSVTDRSFHVPDDLTAGLPNELDLHLSTLGP 129
++PP ++ EDV++++R+ VP D T + ELD HL L P
Sbjct: 10 AKPPGLPLGLEQGEDVALSNRALDVPHDETVLVIQELDSHLGHLTP 55
>05_03_0079 +
8212648-8212724,8212844-8212993,8213211-8213351,
8213658-8213820,8213901-8214094,8214174-8214369,
8214462-8214539,8214933-8215162,8215574-8215688,
8215878-8215952,8216032-8216172,8216309-8216512,
8216586-8216747,8216787-8216794,8217099-8217223,
8217316-8217438,8218177-8218307,8218527-8218658
Length = 814
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 224 DVSVTDRSFHVPDDLTAGLPNELDLHLSTLGPENQ 120
D D +VP D AG P E+D GPEN+
Sbjct: 655 DFQDADDGTNVPADNDAGQPTEMDAAPQQDGPENE 689
>01_03_0183 +
13543833-13544051,13544161-13544257,13545616-13545707,
13545928-13546047,13546170-13546355,13546439-13546602,
13546691-13546769,13548256-13548387,13548560-13548687,
13548785-13549140,13549211-13549221,13549312-13549431,
13549510-13549637,13552210-13552260,13553105-13553189,
13553856-13553954,13555260-13555535
Length = 780
Score = 27.5 bits (58), Expect = 5.1
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 82 QRSC-SCRESTRPYWFSGPS 138
+RSC CR +T P W SGP+
Sbjct: 667 RRSCVECRATTTPMWRSGPT 686
>07_03_1727 +
29068348-29068571,29069473-29069514,29069593-29069839,
29069936-29070013,29070551-29070736,29070829-29071126,
29071775-29072244
Length = 514
Score = 27.1 bits (57), Expect = 6.7
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +3
Query: 18 QLWCTCVNCINARYYKPKWINPTFL-LVS*KYSAVLVLRAQCTQVKVEFI-GETSRQIIR 191
Q + V C+N YY KWI L L+ S ++ + +++ I E R +R
Sbjct: 212 QTYDEAVKCLNTNYYGLKWITEALLPLLKQSPSGARIVNTTSLRSELKRIPNEKLRDELR 271
Query: 192 NV 197
N+
Sbjct: 272 NI 273
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -1
Query: 136 WALRTSTAEYFHDTSKNVGFIH---FGL*YRALI 44
W L T+ EY+HDT ++ H + YRALI
Sbjct: 362 WELYTARIEYYHDTGDSMVKYHKKFTAMGYRALI 395
>10_06_0001 - 9366721-9367293
Length = 190
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 9 ETRQLWCTCVNCINARYYKPKWINPTFL 92
+T+++ C CV+C N + WINP+ +
Sbjct: 35 KTKEIRCPCVHCKNQKI----WINPSVI 58
>04_04_1090 -
30764340-30764704,30765092-30765204,30765414-30765638,
30766432-30766553,30766617-30767174,30769207-30769477,
30772175-30773256
Length = 911
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 89 LARVVKVLGRTGSQGPVYSSEGRVHWGDQPSDHQERE 199
L +V VLG +G +EG + G +PS H R+
Sbjct: 833 LIGLVPVLGCAARRGAARRAEGDIVGGGKPSSHAPRQ 869
>04_01_0105 + 1098551-1100392
Length = 613
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 80 PNVLARVVKVLGRTGSQGPVYSSEGRVHWGDQ 175
P++LA VV +LGR G Y+ + G+Q
Sbjct: 377 PDILACVVDILGRAGRLDEAYAMVTSMETGEQ 408
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,207,447
Number of Sequences: 37544
Number of extensions: 184691
Number of successful extensions: 444
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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