Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M15
         (442 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    54   5e-08
U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical...    27   8.0  
AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical...    27   8.0  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 25/35 (71%), Positives = 30/35 (85%), Gaps = 1/35 (2%)
 Frame = +3

Query: 129 RAQCTQVKVEFIGE-TSRQIIRNVKGPVRDGDILT 230
           + QCTQV+VEFI +  +R IIRNVKGPVR+GDILT
Sbjct: 19  QGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53



 Score = 31.1 bits (67), Expect = 0.37
 Identities = 16/21 (76%), Positives = 17/21 (80%)
 Frame = +2

Query: 71  MDKPNVLARVVKVLGRTGSQG 133
           MDK   LARV KV+GRTGSQG
Sbjct: 1   MDKLT-LARVTKVIGRTGSQG 20


>U28929-1|AAN63410.1|  418|Caenorhabditis elegans Hypothetical
           protein F09C12.2 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +3

Query: 144 QVKVEFIGETSRQIIRNVKGP-VRD 215
           Q+ +E++G    Q+IR +K P +RD
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRD 291


>AL032657-16|CAJ85780.1|  318|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5b protein.
          Length = 318

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 200 FHVPDDLTAGLPNELDLHLSTLGPENQYGRVLSRHEQERWVYPFW 66
           +H  D +   L N L+  +  + PE     V++R ++E W+  F+
Sbjct: 63  YHNVDYILEFLDNSLNPSVMEMSPEQFEELVMNRKDEETWLVDFF 107


>AL032657-15|CAA21734.1|  788|Caenorhabditis elegans Hypothetical
           protein Y47H9C.5a protein.
          Length = 788

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 200 FHVPDDLTAGLPNELDLHLSTLGPENQYGRVLSRHEQERWVYPFW 66
           +H  D +   L N L+  +  + PE     V++R ++E W+  F+
Sbjct: 533 YHNVDYILEFLDNSLNPSVMEMSPEQFEELVMNRKDEETWLVDFF 577


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,868,474
Number of Sequences: 27780
Number of extensions: 164297
Number of successful extensions: 395
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)