Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M13
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    29   0.59 
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    27   3.1  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    26   4.1  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   5.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   5.5  

>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 445 HALYHIRPTHRHFKSILSQYAIXAPNLA 528
           H +YH RP   H +++  Q+ I  P L+
Sbjct: 92  HGVYHTRPASLHSRTMAPQHTILTPRLS 119


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 268  VGTDYVLRLIKQDGQQINVNDVRXSXNFVNLXMIP 372
            +G D+V  +  + G + + + +    NFVN+ + P
Sbjct: 1189 IGNDFVTIIFNESGLEYDFDTIPSQFNFVNIVITP 1223


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = -1

Query: 615 RMSTERFGYETFXRFDFDAVVGLAQRTDQGKIRCXNCILTKNGLEVSVSGSNVIKGVAQX 436
           R+  +R G+  F   D   V  L    + GKI   +  + K G+ V V G      +   
Sbjct: 469 RLGLKRLGFIIFGNDDSPVVPLLLY--NPGKINAFSHEMLKRGIAVVVVGYPACPLLTSR 526

Query: 435 ARFLXCHSHN 406
            RF    SHN
Sbjct: 527 VRFCFSASHN 536


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 286  LRLIKQDGQQINVNDVRXSXNFVNLXM 366
            L  + QDGQ + + D+R S  FV L +
Sbjct: 1080 LHFMLQDGQNLPIGDIRSSDPFVVLKL 1106


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 68  FYNYSVVFHEYGRNIVALAV*LSPASLRK*I-TFIANTPXLRIHXPWRCSGNNANTSTKG 244
           F+ YS     YG   +AL        L K I T I +T    I   W+C  +N NTS+  
Sbjct: 136 FFKYSKTNLSYGVRSIALD------GLSKCIETSIQSTNEDLIKEIWKCIKSNLNTSSTN 189

Query: 245 TSISFXKLSELIMFCGSSNRTGS 313
             +S  + +  I+  GSS    S
Sbjct: 190 VLLSALRCAYYIL--GSSRLRNS 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,109
Number of Sequences: 5004
Number of extensions: 46330
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)