Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_M12
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr 3... 129 3e-31
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 92 7e-20
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.44
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 29 0.44
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p... 27 1.8
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 27 1.8
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 3.1
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 3.1
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.1
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 26 4.1
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 26 5.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 7.2
SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyce... 25 7.2
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 25 9.5
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su... 25 9.5
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 25 9.5
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 9.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 9.5
>SPCC1795.05c |||uridylate kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 191
Score = 129 bits (312), Expect = 3e-31
Identities = 68/179 (37%), Positives = 109/179 (60%), Gaps = 5/179 (2%)
Frame = +3
Query: 126 IVWVLGGPGSGKGTQCDKIVAKYG-FTHLSTGDLLRAEV-KSGSERAKCLTAIMERGELV 299
+++VLGGPG+GKGTQCD++ K+ F H+S GD LR E + GS+ + ++ G++V
Sbjct: 4 VIFVLGGPGAGKGTQCDRLAEKFDKFVHISAGDCLREEQNRPGSKYGNLIKEYIKDGKIV 63
Query: 300 PNEIVLDLLKEAILARAEES-KGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLT 476
P EI + LL+ + ++ FLIDG+PRE Q FE+++ P +YF ET+
Sbjct: 64 PMEITISLLETKMKECHDKGIDKFLIDGFPREMDQCEGFEKSVCPAKFALYFRCGQETML 123
Query: 477 QRLLGRAASSGRADDNEETIKLRLKTFLXNNDLVL--AQYPDKLXRINAERPVDEIFAE 647
+RL+ R +SGR+DDN E+IK R T+ + V+ + ++L I+AE+ D +F +
Sbjct: 124 KRLIHRGKTSGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDPDAVFED 182
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 91.9 bits (218), Expect = 7e-20
Identities = 47/129 (36%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Frame = +3
Query: 135 VLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEIV 314
++G PG+GKGTQ I KYG HL+TGD+LR++V +E K IM++G LV ++IV
Sbjct: 8 LVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDDIV 67
Query: 315 LDLLKEAILARAEESKGFLIDGYPREKSQG----IAFEENIAPVSVIIYFEASSETLTQR 482
++K+ IL E GF++DG+PR Q +E ++ ++ + E L +R
Sbjct: 68 TGMIKDEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRR 127
Query: 483 LLGRAASSG 509
+ GR G
Sbjct: 128 ITGRLVHPG 136
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 29.5 bits (63), Expect = 0.44
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +3
Query: 96 MAPIDTSKKPI--VWVLGGP-GSGKGTQCDKIVAKYGFTHLSTGDL 224
+ PI+ + +P V+V+ GP GSGK T + K GF ++ DL
Sbjct: 3 VTPINPTNQPYKYVFVVIGPAGSGKTTMAKAVSEKLGFEYIEGDDL 48
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 114 SKKPIVWVLGGPGSGKGTQCDKIVAKYGFT 203
SK I+ +LG GSGK TQ + +A+ G+T
Sbjct: 524 SKNQILVLLGETGSGKTTQITQYLAEEGYT 553
>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 235
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 117 KKPIVWVLGGPGSGKGTQCDKIVAK 191
++ ++ + GGPGSGK T C I+AK
Sbjct: 28 QRVLIGLAGGPGSGKSTLC-AILAK 51
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 108 DTSKKPIVWVLGGPGSGKGTQCDKIVAK 191
D+ K I+ + GGP SGK C++++ +
Sbjct: 4 DSVKSAIIGIAGGPFSGKTQLCEQLLER 31
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 564 NNDLVLAQYPDKLXRINAERPVDEIFAEV 650
NN LV+A DKL ++ ERP D I E+
Sbjct: 59 NNILVMALTSDKLMIVDLERPEDIIDIEL 87
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +1
Query: 166 HNATRSSPNTGSLTSRLETCSGLKSKAARRGRNALPLLWKE--ASLSLMKSSWIC*KKRS 339
++ T +SP + SLTS T S L S + A + AS S+ SS S
Sbjct: 97 NSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTS 156
Query: 340 WPVLKNPKASSSTATLARSHRVSLLKRTS 426
+ + S+++AT S S L T+
Sbjct: 157 SSLASSSTNSTTSATPTSSATSSSLSSTA 185
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 102 PIDTSKKPIVWVLGGPGSGKGTQCDKIVAKY 194
P + IV V+G PG+GK T +V +Y
Sbjct: 68 PDEAPPPVIVAVMGPPGTGKSTLIKSLVRRY 98
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 567 NDLVLAQYPDKLXRINAERPVDEIF 641
+ +VL Q+PDKL R + VD ++
Sbjct: 196 DQMVLMQFPDKLPRFMGDADVDPVW 220
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 217 ETCSGLKSKAARRGRNALPLLWKEASL 297
+ CS + S R GR +P+L K SL
Sbjct: 19 DCCSAVASALLRHGRLTIPMLQKRTSL 45
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 402 GIAFEENIAPVSVIIYFEASSETLTQRLLGRAASSGRADDNEETIK 539
GI+F+ A V+ YF+ S T T +LGR A + + D ++
Sbjct: 2561 GISFDSTKAVAPVLTYFDFCSLT-TGNILGRIALAFTSIDENANLE 2605
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 162 GTQCDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPNEI--VLDLLKEA 335
G +KI++ + + S K R++C ++ GEL+PN + + D L+
Sbjct: 589 GVVLEKIISAVTYDNTSASYGFSDVQKINEMRSRCCFELVRLGELMPNPLMNIFDQLQSI 648
Query: 336 I 338
I
Sbjct: 649 I 649
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 405 IAFEENIAPVSVIIYFEASSETLTQRLLGRAASSGR 512
+A +EN+ P + EAS+ + + LL R +SGR
Sbjct: 1145 LANQENLVPAFFNKFREASTLKIQKALLTRLLNSGR 1180
>SPAC1002.07c |ats1||N-acetyltransferase Ats1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 330 EAILARAEESKGFLIDGYPREKSQGIAFEENIAPVSVIIYFEASSETLTQRL 485
EA + E + GF+ + P + G+ EEN P + IYF + T T R+
Sbjct: 35 EATIPNLEVAFGFIDEVTP--VAYGVFIEENDQPAGMAIYF-LNFSTWTSRV 83
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/36 (25%), Positives = 20/36 (55%)
Frame = +3
Query: 123 PIVWVLGGPGSGKGTQCDKIVAKYGFTHLSTGDLLR 230
P + + G PG+GK T +++ ++ GD+++
Sbjct: 9 PNIIICGTPGTGKTTLAEQVAETTELENICIGDVVK 44
>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 306
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Frame = +3
Query: 423 IAPVSVIIYFEASSETL----TQRLLGRAASSGRADDNEETIKLRLKTFLXNNDLVLAQY 590
+AP ++ A ++L + +G S A + T+K++ K ++L LA
Sbjct: 224 VAPPLYVLLTNALDKSLGLKKLEEAIGAIEKSITASNGTCTVKMKPKAVSETDELELADL 283
Query: 591 PDKLXRINAERPVDE 635
K + NAE DE
Sbjct: 284 MKKFEKENAEISGDE 298
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 126 IVWVLGGPGSGKGTQCDKIVAKY 194
++ ++G GSGK T C K+ Y
Sbjct: 103 VIMMVGLQGSGKTTTCSKLALHY 125
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 171 CDKIVAKYGFTHLSTGDLLRAEVKSGSERAKCLTAIMERGELVPN 305
C I+ L+ D L + +G++ KCL E EL+ N
Sbjct: 414 CQAILRMNSTKALACLDYLNENIFTGNQTMKCLEIHQELSELIRN 458
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 450 FEASSETLTQRLLGRAASSGRADDNEETIKLRLKTF 557
F + R+ GR++ + +DD++ETI L T+
Sbjct: 965 FRRPYSVIPSRMTGRSSFTQLSDDSDETIILASATY 1000
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,027
Number of Sequences: 5004
Number of extensions: 47858
Number of successful extensions: 157
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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