Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M08
         (458 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...   107   5e-24
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    32   0.23 
AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical ...    28   3.8  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   5.0  
Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z54306-3|CAE17716.1|  165|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score =  107 bits (256), Expect = 5e-24
 Identities = 53/86 (61%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
 Frame = +2

Query: 167 MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR 340
           MSI NLN   P ADA +   +ED V+ G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQ 57

Query: 341 ACXKEFACNGTVVEHPEYGEVLQLQG 418
              K+ +CNGT+VEHPEYGEV+QL G
Sbjct: 58  YLKKKHSCNGTIVEHPEYGEVIQLTG 83


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +2

Query: 152 PTFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 298
           PTFNR  I N   FDP+  +A K +   + DGL +  + + R  + T+ T+
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447


>AF068710-3|ABO16459.1|  189|Caenorhabditis elegans Hypothetical
           protein T06A1.4 protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/60 (23%), Positives = 28/60 (46%)
 Frame = +2

Query: 125 RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 304
           ++V +   DP F  ++ Q L  FD    A++    DVQ     ++   +  R+ ++ + G
Sbjct: 83  QTVDMNCSDPGFEAIAAQYLKVFDDVITAVEEKPGDVQTACDRLQAVGKMHRQKVSGMDG 142


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 411 SCSTSPYSGCSTTVPLHANSXLHARTIFFRSYSEERPCTVVSVLRPFRCW 262
           S S+S   G +   P  + S +H+ TI  R+YS     ++++ ++  R W
Sbjct: 144 STSSSHNFGAAGAGPSSSGSSVHSGTITLRTYSARNGSSLMAPVQDTRRW 193


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -3

Query: 411 SCSTSPYSGCSTTVPLHANSXLHARTIFFRSYSEERPCTVVSVLRPFRCW 262
           S S+S   G +   P  + S +H+ TI  R+YS     ++++ ++  R W
Sbjct: 144 STSSSHNFGAAGAGPSSSGSSVHSGTITLRTYSARNGSSLMAPVQDTRRW 193


>Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical
           protein K08E3.7 protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 382 LHDRTVARELLXACPHDLLQVIFRGKALHRSQRLTPVSL 266
           + D T   E L   P D L+V+F GK L +S  +  +SL
Sbjct: 30  IEDLTKDVEKLTEIPSDELEVVFCGKKLSKSTIMRDLSL 68


>Z54306-3|CAE17716.1|  165|Caenorhabditis elegans Hypothetical
           protein B0457.6 protein.
          Length = 165

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 146 RDPTFNRMSIQNLNTFDPFADAIKSSEDDVQD 241
           R PT  +     + TF+ F D  +S E+D+Q+
Sbjct: 19  RPPTQIKRRDDRIRTFNSFDDITESEEEDIQE 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,368,460
Number of Sequences: 27780
Number of extensions: 204006
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)