Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_M05
(655 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 195 3e-50
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 183 9e-47
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 118 4e-27
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 100 1e-21
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 51 8e-07
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 37 0.014
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 31 0.54
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 6.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 195 bits (475), Expect = 3e-50
Identities = 90/160 (56%), Positives = 112/160 (70%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 354
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 355 KTTAKGLFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 534
+A+ FK+L+KYRP RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 535 KXKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKS 654
+AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKA 189
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 183 bits (446), Expect = 9e-47
Identities = 90/160 (56%), Positives = 112/160 (70%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 354
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 355 KTTAKGLFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 534
+A+ FK+L+KYRP RPNT+R G NT+T+LVE
Sbjct: 90 SQSARQAFKLLDKYRP--------------------ESTEVTKRPNTVRHGVNTITRLVE 129
Query: 535 KXKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKS 654
+AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKA 169
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 118 bits (284), Expect = 4e-27
Identities = 51/76 (67%), Positives = 63/76 (82%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 354
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 355 KTTAKGLFKILEKYRP 402
+A+ FK+L+KYRP
Sbjct: 193 SHSARQAFKLLDKYRP 208
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 100 bits (239), Expect = 1e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1
Query: 175 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 354
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 50.8 bits (116), Expect = 8e-07
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +1
Query: 496 IRSGTNTVTKLVEKXKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKS 654
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKA 87
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +1
Query: 493 TIRSGTNTVTKLVEKXKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 651
T+R G V K + + + + ++A +V PI++ +P +C + +PY + +
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSR 120
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -2
Query: 432 QPLFXGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 331
QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 171 QPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 323 LRSTNLPRHWTRLQLRA 373
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,447
Number of Sequences: 27780
Number of extensions: 254096
Number of successful extensions: 723
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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