Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M04
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    29   0.77 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   4.1  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.1  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.5  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +2

Query: 224 LXDIVLGEEKESKSXYDEGFRAGIXAGNIXGYHLGYHRGAELGRELG 364
           + ++ L EEK S   Y EG   G       G+  G+  G+ LG ++G
Sbjct: 262 MHELELLEEKHSNFGYSEGIIKGKMQVAQSGFDDGFKHGSRLGFQMG 308


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -2

Query: 389 IHLLCSSRNLAHDPVQHPDDSPSDN 315
           I LLC S N A DPV  P +   DN
Sbjct: 708 IRLLCYSSNNAIDPVSAPGNLDFDN 732


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 146  KIENGDHQNVAKLCLLMAVSKDFNDVLXDIVLG 244
            KIE  D +N  KL L + +SKD+  +L + + G
Sbjct: 1677 KIEEPDLENNVKLILNLILSKDYGFLLKENLAG 1709


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 508 YVMVFRIIWRKIIY*FFNFEQLGYYF 431
           + M+FR  W+ II+ FF+ E  G YF
Sbjct: 201 FEMIFRHGWKYIIFAFFDVE--GNYF 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,238,456
Number of Sequences: 5004
Number of extensions: 40455
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)