Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M04
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0686 + 20697493-20697927                                         46   3e-05
07_01_0154 - 1094256-1094672,1094954-1094977,1095867-1095891,109...    28   5.6  
06_01_0210 - 1596578-1596868,1598550-1598828,1600503-1600511,160...    28   5.6  

>07_03_0686 + 20697493-20697927
          Length = 144

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
 Frame = +2

Query: 209 DFNDVLXDIVLGE---EKESKSXYDEGFRAGIXAGNIXGYHLGYHRGAELGRELGFYWST 379
           DF+ +   ++L E   +   K+ Y E    G+ +G   G  +G   G ++G ELGFY   
Sbjct: 8   DFDFLEPSVLLDETHYQTGFKNGYSE----GLVSGKEEGRQVGLKNGFQVGEELGFYQGC 63

Query: 380 VNEYLELNKTSDAKLSXKIIAQLLKVKELIDNFPPNNSEDHDILGMADAVRAQYKKACAL 559
           ++ +  L        S ++   + ++  L+ ++P +N ED  +  + + +R +++   A 
Sbjct: 64  LDVWTSLVSIDQDAFSARVRKNIEQLAALLRSYPLSNPEDEQVQDIMEKIRLKFRVITAS 123

Query: 560 L 562
           L
Sbjct: 124 L 124


>07_01_0154 -
           1094256-1094672,1094954-1094977,1095867-1095891,
           1096014-1096304,1096391-1096470,1096953-1097052,
           1097143-1097204,1097650-1097750,1097940-1098117,
           1098298-1098924,1099014-1099100,1099804-1099905,
           1100265-1100348,1100580-1100657
          Length = 751

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 567 IFNKAQAFLYCALTASAIPSMS--WSSELFGGKL 472
           +FN     L   L +S I SM   W+SEL GGKL
Sbjct: 423 LFNVLLQLLDAPLISSKIDSMENRWASELIGGKL 456


>06_01_0210 -
           1596578-1596868,1598550-1598828,1600503-1600511,
           1600713-1600781
          Length = 215

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 365 NLAHDPVQHPDDSPSDNPXCYQLXCLL*TLHH 270
           NLAH PV+H    P   P       ++ T+HH
Sbjct: 133 NLAHPPVEHRQLGPHHRPHTSAQNRIIRTIHH 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,383,142
Number of Sequences: 37544
Number of extensions: 227560
Number of successful extensions: 521
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)