Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M03
         (558 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   3.1  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   3.1  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   5.4  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   7.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.5  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.5  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.5  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.5  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 474 IDAFNEILVTSGAYEALYSTIL 539
           IDAFN+I   S     LYS++L
Sbjct: 271 IDAFNDIFGWSFLLFTLYSSLL 292


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 474 IDAFNEILVTSGAYEALYSTIL 539
           IDAFN+I   S     LYS++L
Sbjct: 197 IDAFNDIFGWSFLLFTLYSSLL 218


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 223 NRNFSAIVRQTLNCRIK 173
           + NF+  +RQ   CR K
Sbjct: 164 DNNFNVFLRQVFTCRCK 180


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = -3

Query: 301 TAGLYSAANCMYSTHTLFSPAP*RSGNRNFSAIVRQTLNCRIKCSNF 161
           T  LYS +  M ++    SP        + S +   ++NC  + ++F
Sbjct: 3   TQKLYSDSTTMATSSNAMSPMTPTYSMNSMSCVSMPSMNCSPQGASF 49


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 300 VNLGQGFPDYHAPKHVT 350
           +N G   P Y  P+H++
Sbjct: 7   MNPGTALPTYQQPQHIS 23


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 300 VNLGQGFPDYHAPKHVT 350
           +N G   P Y  P+H++
Sbjct: 7   MNPGTALPTYQQPQHIS 23


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 294 PAVNLGQGFPDYH 332
           P+V L QG P +H
Sbjct: 52  PSVGLRQGIPPHH 64


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 300 VNLGQGFPDYHAPKHVT 350
           +N G   P Y  P+H++
Sbjct: 7   MNPGTALPTYQQPQHIS 23


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +3

Query: 300 VNLGQGFPDYHAPKHVT 350
           +N G   P Y  P+H++
Sbjct: 7   MNPGTALPTYQQPQHIS 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,033
Number of Sequences: 336
Number of extensions: 2710
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13681771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)