Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M03
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591     65   4e-11
10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977...    44   8e-05
01_01_0549 - 4051257-4051709,4051967-4052075,4053194-4053252,405...    31   0.62 
03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268     28   4.4  
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443...    28   5.8  

>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
          Length = 455

 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 39/126 (30%), Positives = 67/126 (53%)
 Frame = +3

Query: 180 RQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTXAL 359
           +Q  V  T+     + +R    + +++ +   LA ++  A+NLGQGFP++  P  V  A 
Sbjct: 59  QQQPVQSTLGPGVTVAKRLEKFKTTIFTQMSMLAIKHG-AINLGQGFPNFDGPDFVKEAA 117

Query: 360 SQIATSENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTIL 539
            Q   +     +QY RG+G+P L   +++ +    G Q+D   E+ VTSG  EA+ +TIL
Sbjct: 118 IQAINAGK---NQYARGYGVPELNSAIAERFLKDSGLQVDPEKEVTVTSGCTEAIAATIL 174

Query: 540 XHVDTG 557
             ++ G
Sbjct: 175 GLINPG 180


>10_08_0422 -
           17796916-17797167,17797328-17797453,17797546-17797700,
           17797793-17797907,17798022-17798118,17798274-17798368,
           17798500-17798585,17798689-17798819,17798909-17799090
          Length = 412

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
 Frame = +3

Query: 261 VEYIQLAAEYKPAVNLGQGFPDYHAPKHVTXALSQIATSENPLLHQYTRGFGL-PRLVEN 437
           ++ +   A+   AVNL +GFPD+ AP HV  A +    ++   L+QY    G+   L E 
Sbjct: 17  IQQLSHLAQRAGAVNLAEGFPDFPAPAHVKAAAAAAIAAD---LNQYRHVQGICDALAET 73

Query: 438 LSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILXHVDTG 557
           + + +    G ++D   +  V  G  EA  + I   +D G
Sbjct: 74  MKRDH----GLRVDPLTDFAVCCGQSEAFAAAIFAIIDQG 109


>01_01_0549 -
           4051257-4051709,4051967-4052075,4053194-4053252,
           4053339-4053445,4053711-4053867,4054110-4054169,
           4055396-4055524,4056027-4056074,4057148-4057214,
           4057948-4058006
          Length = 415

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
 Frame = +3

Query: 213 KFRLPERYGAGEKSVWVEYI---QLAAEYKPAVNLGQGFPDYHAPKHVTXALSQIATSEN 383
           +F L     A + S W E     +L    K  ++L QG   +  P+     + +I     
Sbjct: 22  RFGLAFEQKAQKVSAWEEQNAMQELLRGNKDVMSLAQGVVYWQPPEAAMNKIKEIVWE-- 79

Query: 384 PLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILXHVDTG 557
           P + +Y    GLP L E L +    L        + I+VTSGA +A  + +L   D G
Sbjct: 80  PSISKYGSDDGLPELREALLE---KLRRENKLTKSSIMVTSGANQAFVNVVLTLCDAG 134


>03_02_0732 - 10794173-10795069,10795301-10795891,10797032-10797268
          Length = 574

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 273 VCTQPIRFSHQLHNVPAIETFLPL 202
           +C  P+ F++ L N PA ETFLPL
Sbjct: 294 MCAAPVVFNN-LINAPASETFLPL 316


>01_06_1103 -
           34543915-34543955,34544069-34544137,34544294-34544395,
           34545603-34545708,34545998-34546079,34546850-34547142
          Length = 230

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 382 IHCFISTQEALVCRASWRIYQRFTPR 459
           +HCF+S Q A + R  W   +RF  R
Sbjct: 19  LHCFLSLQTARLPRDDWASEERFQSR 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,019,691
Number of Sequences: 37544
Number of extensions: 279812
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)