Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M03
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical pr...   105   3e-23
Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical pr...   104   4e-23
AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical ...   101   3e-22
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF047657-5|AAK18949.1|  335|Caenorhabditis elegans Serpentine re...    27   9.1  

>Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical
           protein R03A10.4a protein.
          Length = 441

 Score =  105 bits (251), Expect = 3e-23
 Identities = 61/125 (48%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
 Frame = +3

Query: 189 SVCRTMAEKFRLP-ERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTXALSQ 365
           S CR  +     P ER      S+WVE+  LAAE K AVNLGQGFPD  APK VT  L  
Sbjct: 14  SRCRMSSSFAPKPAERTAQHSASIWVEFTTLAAETK-AVNLGQGFPDSPAPKFVTDLLEN 72

Query: 366 IATS-ENPLLHQYTRGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILX 542
           ++   E    HQYTRG+G P LV+ L+K+YS     Q+D  NE+LVT GAY +LY   L 
Sbjct: 73  LSKHPELTAAHQYTRGYGHPMLVDILAKMYSHFYNVQVDPMNEVLVTVGAYLSLYYAFLG 132

Query: 543 HVDTG 557
            V+ G
Sbjct: 133 WVNKG 137


>Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical
           protein R03A10.4b protein.
          Length = 424

 Score =  104 bits (250), Expect = 4e-23
 Identities = 57/111 (51%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
 Frame = +3

Query: 228 ERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTXALSQIATS-ENPLLHQYT 404
           ER      S+WVE+  LAAE K AVNLGQGFPD  APK VT  L  ++   E    HQYT
Sbjct: 11  ERTAQHSASIWVEFTTLAAETK-AVNLGQGFPDSPAPKFVTDLLENLSKHPELTAAHQYT 69

Query: 405 RGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILXHVDTG 557
           RG+G P LV+ L+K+YS     Q+D  NE+LVT GAY +LY   L  V+ G
Sbjct: 70  RGYGHPMLVDILAKMYSHFYNVQVDPMNEVLVTVGAYLSLYYAFLGWVNKG 120


>AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical
           protein F28H6.3 protein.
          Length = 437

 Score =  101 bits (243), Expect = 3e-22
 Identities = 55/111 (49%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
 Frame = +3

Query: 228 ERYGAGEKSVWVEYIQLAAEYKPAVNLGQGFPDYHAPKHVTXALSQIATSENPL-LHQYT 404
           E  G  ++S+WVE+ +LA E K AV+LGQGFPD  APK VT  L  IA+    +  HQYT
Sbjct: 11  ENVGEHQESIWVEFGKLAIENK-AVSLGQGFPDSPAPKFVTEILKDIASHPEKIESHQYT 69

Query: 405 RGFGLPRLVENLSKVYSPLIGRQIDAFNEILVTSGAYEALYSTILXHVDTG 557
           R FG P LV  LSK+YS   G  ++A ++IL+T GAY ALY + L  +  G
Sbjct: 70  RAFGHPDLVGILSKIYSYFYGVNVNATDDILITVGAYNALYYSFLGWISKG 120


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 171 HF-IRQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQL 278
           HF I  ++ CR+   K R+   YG  E S W  Y ++
Sbjct: 242 HFPISSINSCRSPENKTRVFNVYGVTEVSCWASYFEV 278


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 171 HF-IRQLSVCRTMAEKFRLPERYGAGEKSVWVEYIQL 278
           HF I  ++ CR+   K R+   YG  E S W  Y ++
Sbjct: 242 HFPISSINSCRSPENKTRVFNVYGVTEVSCWASYFEV 278


>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
            C06B8.7 protein.
          Length = 3118

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 366  IATSENPLLHQYTRGFGLPRLV 431
            + ++EN +  +YTR FG P+LV
Sbjct: 1387 VVSTENAMRMRYTRSFGKPKLV 1408


>AF047657-5|AAK18949.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein241 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 315 PDQGSRQAYTLQLIVCTQPIRFSHQLHNVPAIETFLPLY 199
           P+Q S +   L  I C  P  F H+   V A++  +P+Y
Sbjct: 160 PEQESARQLVLSKIPCQPPFDFKHREIYVLALDYDVPVY 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,209,171
Number of Sequences: 27780
Number of extensions: 248317
Number of successful extensions: 425
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)