Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_M02
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   196   8e-53
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   194   2e-52
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    83   1e-18
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    50   1e-08
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.19 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.45 

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  196 bits (477), Expect = 8e-53
 Identities = 91/94 (96%), Positives = 91/94 (96%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFXKEAQEMGKGSFKYAWVL 243
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KF KEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 244 DKLKAERERGITIDIALWKFETSKYYVTIIDAPG 345
           DKLKAERERGITIDIALWKFETSKYYVTIIDAPG
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPG 94


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  194 bits (474), Expect = 2e-52
 Identities = 90/94 (95%), Positives = 91/94 (96%)
 Frame = +1

Query: 64  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIXKFXKEAQEMGKGSFKYAWVL 243
           MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTI KF KEAQEMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 244 DKLKAERERGITIDIALWKFETSKYYVTIIDAPG 345
           DKLKAERERGITIDIALWKFET+KYYVTIIDAPG
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPG 94


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 82.6 bits (195), Expect = 1e-18
 Identities = 37/37 (100%), Positives = 37/37 (100%)
 Frame = +1

Query: 235 WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPG 345
           WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPG
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPG 37


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 49.6 bits (113), Expect = 1e-08
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +1

Query: 283 DIALWKFETSKYYVTIIDAPG 345
           DIALWKFETSKYYVTIIDAPG
Sbjct: 1   DIALWKFETSKYYVTIIDAPG 21


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 0.19
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  KTHINIVVIGHVDSGKST 129
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.45
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 85  INIVVIGHVDSGKST 129
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,424
Number of Sequences: 438
Number of extensions: 1500
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)