Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L23
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   107   8e-25
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   105   2e-24
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    26   1.9  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   3.3  
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   4.4  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   7.7  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  107 bits (256), Expect = 8e-25
 Identities = 46/65 (70%), Positives = 52/65 (80%)
 Frame = +2

Query: 89  RRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRXKTTGTGRMRHLKIVRRRFRNGFK 268
           RRCG  S+HIQKS CA CGYPAAK RSY+W  KAKR +TTGTGRM +LK V R F+NGF+
Sbjct: 20  RRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFR 79

Query: 269 EGKPT 283
            GKPT
Sbjct: 80  AGKPT 84



 Score = 37.5 bits (83), Expect = 8e-04
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 31 MTKGTSSFGKRRNKTHTLCTK 93
          MTKGT SFG R NK+HT+C +
Sbjct: 1  MTKGTQSFGMRHNKSHTICRR 21


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  105 bits (253), Expect = 2e-24
 Identities = 47/72 (65%), Positives = 53/72 (73%)
 Frame = +2

Query: 89  RRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRXKTTGTGRMRHLKIVRRRFRNGFK 268
           RRCG  S+HIQKS CA CGYPAAK RSY+W  KAKR +TTGTGRM +LK V R F+NGF+
Sbjct: 20  RRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFR 79

Query: 269 EGKPTPPKKAVA 304
            GKP     A A
Sbjct: 80  SGKPAAAVAASA 91



 Score = 37.5 bits (83), Expect = 8e-04
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 31 MTKGTSSFGKRRNKTHTLCTK 93
          MTKGT SFG R NK+HT+C +
Sbjct: 1  MTKGTQSFGMRHNKSHTICRR 21


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 125 IFECDMTXYHIFVHNVWVL 69
           +FE D   YH++ + VW+L
Sbjct: 137 MFEIDSKNYHVWSYRVWIL 155


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +1

Query: 31  MTKGTSSFGKRRNKTHTLCTKMWXIVISH---SKIKM--RPMWISCSKITILPLVSEG*A 195
           +  GT       N+   +C +M    +SH    +I+    P W+SC+++ +L    +   
Sbjct: 232 LLNGTGWIYSLLNQNVLMCLEMPFFALSHWYAFRIEDYDTPTWLSCARLPLLKAFKDVIG 291

Query: 196 XEDYW 210
            +D W
Sbjct: 292 LKDVW 296


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 66  K*DPYVMHEDVVXRHITFKNQNAPNVDILQQNY 164
           K D  + H D V +H++ +++  PN  I   +Y
Sbjct: 783 KLDESLRHSDKVSQHLSLRDEGTPNHLIKHNSY 815


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 340 IFIYLAHIDS*RSYSLLGRRWFPFFKT---ITEAP 245
           IFIYL+  +    Y +L  R F  +KT   IT+ P
Sbjct: 17  IFIYLSVANKIMFYCILNERAFKHYKTYRRITDCP 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,557
Number of Sequences: 5004
Number of extensions: 22583
Number of successful extensions: 49
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)