Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_L23
(401 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63... 103 5e-23
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161... 102 9e-23
02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378... 101 2e-22
11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788 27 4.2
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83... 27 5.6
01_05_0367 + 21427130-21427136,21427733-21427822,21427927-214281... 27 5.6
12_02_0377 + 18342631-18342675,18343654-18343771,18344233-183443... 26 9.7
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873... 26 9.7
>02_01_0089 +
633642-633644,633728-633863,635356-635457,635565-635608
Length = 94
Score = 103 bits (247), Expect = 5e-23
Identities = 42/73 (57%), Positives = 57/73 (78%)
Frame = +2
Query: 92 RCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRXKTTGTGRMRHLKIVRRRFRNGFKE 271
RCG S+H+QKS C+ CGYPAA++R Y+WSVKA R KTTGTGRMR+++ V RRF++ F+E
Sbjct: 21 RCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFRE 80
Query: 272 GKPTPPKKAVASS 310
G P+K A++
Sbjct: 81 GTEATPRKRAAAA 93
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 31 MTKGTSSFGKRRNKTHTLCTK 93
M KGT SFGKRRNKTHTLC +
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVR 21
>08_01_0195 +
1612938-1613003,1613026-1613161,1614624-1614725,
1614833-1614876
Length = 115
Score = 102 bits (245), Expect = 9e-23
Identities = 42/71 (59%), Positives = 55/71 (77%)
Frame = +2
Query: 92 RCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRXKTTGTGRMRHLKIVRRRFRNGFKE 271
RCG S+H+QKS C+ CGYPAA++R Y+WSVKA R KTTGTGRMR+++ V RRF++ F+E
Sbjct: 42 RCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFRE 101
Query: 272 GKPTPPKKAVA 304
G P+K A
Sbjct: 102 GTEATPRKRAA 112
Score = 40.7 bits (91), Expect = 4e-04
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 37 KGTSSFGKRRNKTHTLCTK 93
KGT SFGKRRNKTHTLC +
Sbjct: 24 KGTGSFGKRRNKTHTLCVR 42
>02_05_1204 +
34936696-34936698,34936809-34936944,34937794-34937895,
34938153-34938199
Length = 95
Score = 101 bits (243), Expect = 2e-22
Identities = 42/73 (57%), Positives = 57/73 (78%)
Frame = +2
Query: 92 RCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKRXKTTGTGRMRHLKIVRRRFRNGFKE 271
RCG S+H+QKS C+ CGYPAA++R Y+WSVKA R KTTGTGRMR+L+ V +RF++ F+E
Sbjct: 21 RCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYLRHVPKRFKSNFRE 80
Query: 272 GKPTPPKKAVASS 310
G P+K A++
Sbjct: 81 GTEAAPRKKGAAA 93
Score = 41.9 bits (94), Expect = 2e-04
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 31 MTKGTSSFGKRRNKTHTLCTK 93
M KGT SFGKRRNKTHTLC +
Sbjct: 1 MGKGTGSFGKRRNKTHTLCVR 21
>11_06_0288 - 21962546-21962977,21963041-21963211,21963411-21963788
Length = 326
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 145 ISCSKITILPLVSEG*AXEDYWNW--PHASFEDC 240
I+ +T + +S + +D W W PH +EDC
Sbjct: 116 IALPPVTTIEQLSIARSGDDKWTWLPPHKDYEDC 149
>03_01_0104 -
830884-831282,831511-832205,832368-833387,833570-833696,
834342-834709,834780-835059,835137-835466
Length = 1072
Score = 27.1 bits (57), Expect = 5.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 70 KTHTLCTKMWXIVISHSKIKMRPMWISCSK 159
K T C K W V+ H KI+ +W S ++
Sbjct: 508 KDGTFCGKPWRNVLEHLKIQDTDLWSSTNE 537
>01_05_0367 +
21427130-21427136,21427733-21427822,21427927-21428105,
21429115-21429432,21430537-21430563
Length = 206
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 46 SSFGKRRNKTHTLCTKMWXIVISHSKIKMRPMWISCS 156
S FG RR K + + K+ I S ++ MWISC+
Sbjct: 142 SRFGVRRGKINLI--KLLSIPTSEIDAQLEEMWISCT 176
>12_02_0377 +
18342631-18342675,18343654-18343771,18344233-18344380,
18345142-18345220,18345330-18345449,18346112-18346285,
18346424-18346525
Length = 261
Score = 26.2 bits (55), Expect = 9.7
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +2
Query: 191 KRXKTTGTGRMRHLKIVRRRFRNGFKEGKPTPPKKAV 301
K K GTGR RH + +FR G P P A+
Sbjct: 111 KPYKQKGTGRARHGTLRGPQFRGGATMHGPKPRSHAI 147
>03_02_0472 -
8737955-8738580,8738704-8738767,8739090-8739239,
8739311-8739422,8739686-8739708
Length = 324
Score = 26.2 bits (55), Expect = 9.7
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 74 PIRYARRCGXSSYHIQKSKCAQCGYPAAKLRSYHWSVKAKR 196
P RY R S H +C P+A+ RSY SV +R
Sbjct: 225 PYRYRRERSCSYDHSVSPYYRRCYSPSARGRSYSRSVSPQR 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,977,215
Number of Sequences: 37544
Number of extensions: 153104
Number of successful extensions: 351
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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