Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_L20
(302 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces... 56 2e-09
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 26 1.1
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 1.1
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 1.1
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 26 1.1
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 1.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 3.2
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 24 5.6
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 23 7.5
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 23 9.9
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 23 9.9
>SPCC663.04 |rpl39||60S ribosomal protein L39|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 51
Score = 55.6 bits (128), Expect = 2e-09
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +3
Query: 78 KS*NKTDPFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
K+ + P W+R+RTGNT+ YN KRRHWRRTKL +
Sbjct: 15 KAARQNRPIPQWIRLRTGNTVHYNMKRRHWRRTKLNI 51
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 1.1
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 107 EEWVCFVSAFWPICALIINVLWADILNNQVVE 12
E W A + + +IN W LN Q+VE
Sbjct: 22 EYWPSVAPAATELISKLINAFWCQTLNGQLVE 53
>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 26.2 bits (55), Expect = 1.1
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -1
Query: 200 FTSLQLELCPSPVTPLSVISNSVSCAHP-YPAEEWVCFVSAFWPICALIINVLWADILNN 24
F +++ + V +++I+ S+ ++ YP + + ++A + C LI +++W D L N
Sbjct: 13 FKNIKQQKSQVSVVDVTMINISLYKSYKSYPTNKVLSELAALFESCNLIFDLIWFDDLQN 72
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 26.2 bits (55), Expect = 1.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 200 FTSLQLELCPSPVTPLSVISNSVSCAHPYP 111
++S+ L +P TP S +N V CA P P
Sbjct: 332 YSSIPLPAERNPKTPQSFSTNIVQCASPSP 361
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 26.2 bits (55), Expect = 1.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 173 PSPVTPLSVISNSVSCAHPYPAEEWVCFVS 84
P+P +P SVISN S EW S
Sbjct: 366 PAPYSPTSVISNHSSTGKSLVISEWAYLAS 395
>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 105
Score = 25.8 bits (54), Expect = 1.4
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 178 FVLLQ*RLLALYRIVFPVRILTQLRNGSVLFQLFGQFAR 62
FV RL +LY IV + L LRNG +L+ + R
Sbjct: 52 FVYCSMRLFSLYTIVQYFKSLRCLRNGRTEVRLYTHYKR 90
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 24.6 bits (51), Expect = 3.2
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 170 SPVTPLSVISNSVSCAHPY 114
+P TP++V S++V+ AH Y
Sbjct: 982 NPYTPIAVASSTVNPAHTY 1000
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 23.8 bits (49), Expect = 5.6
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 232 YRVFITLHLTHSQAYNLSFVLLQ*RLLALYRIV 134
YRVFI LHL A +FVL + L +Y I+
Sbjct: 236 YRVFIELHLNEEIA--AAFVLQKPILPLIYNIL 266
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 23.4 bits (48), Expect = 7.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 110 AEEWVCFVSAFWPICALIINVLWADILN 27
AE W F +P+C L++ L ++ L+
Sbjct: 321 AESWKRFQRLLFPLCILLVLYLVSNFLS 348
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 23.0 bits (47), Expect = 9.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 110 AEEWVCFVSAFWPICALIINVLWADILNNQ 21
A+E + +S+F L V+W +LNN+
Sbjct: 955 ADEQILLLSSFVNFVPLFRKVIWNLLLNNK 984
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 23.0 bits (47), Expect = 9.9
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -1
Query: 107 EEWVCFVSAFWPICALI 57
++W+ VS FWP+ L+
Sbjct: 187 KQWINHVSDFWPLEKLV 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 950,515
Number of Sequences: 5004
Number of extensions: 16040
Number of successful extensions: 47
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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