Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_L20
(302 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39 pro... 56 2e-08
D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39 pro... 56 2e-08
BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39 p... 56 2e-08
BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39 p... 56 2e-08
AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39 p... 56 2e-08
AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39 v... 55 5e-08
L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39 pro... 50 1e-06
BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-l... 50 1e-06
AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2... 50 1e-06
AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-l... 50 1e-06
BC002760-1|AAH02760.1| 182|Homo sapiens plasma membrane proteol... 27 8.1
AF137386-1|AAD33060.1| 182|Homo sapiens plasmolipin protein. 27 8.1
>U57846-1|AAB02265.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>D79205-1|BAA11465.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>BC070205-1|AAH70205.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>BC001019-1|AAH01019.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>AB061835-1|BAB79473.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 56.0 bits (129), Expect = 2e-08
Identities = 22/30 (73%), Positives = 25/30 (83%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W+RM+TGN IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIRMKTGNKIRYNSKRRHWRRTKLGL 51
>AB209077-1|BAD92314.1| 70|Homo sapiens ribosomal protein L39
variant protein.
Length = 70
Score = 54.8 bits (126), Expect = 5e-08
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W+RM+TGN IRYN+KRRHW+RTKL L
Sbjct: 41 PIPQWIRMKTGNKIRYNSKRRHWKRTKLGL 70
>L05096-1|AAC15859.1| 51|Homo sapiens ribosomal protein L39
protein.
Length = 51
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>BC012328-1|AAH12328.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AF548529-1|AAN52397.1| 51|Homo sapiens ribosomal protein L39-2
protein.
Length = 51
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>AB063610-1|BAC19837.1| 51|Homo sapiens ribosomal protein L39-like
protein.
Length = 51
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +3
Query: 99 PFLSWVRMRTGNTIRYNAKRRHWRRTKLKL 188
P W++M+ G+ IRYN+KRRHWRRTKL L
Sbjct: 22 PIPQWIQMKPGSKIRYNSKRRHWRRTKLGL 51
>BC002760-1|AAH02760.1| 182|Homo sapiens plasma membrane
proteolipid (plasmolipin) protein.
Length = 182
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 122 HPYPAEEWVCFVSAF-WPICALIINV 48
H YPA WV FV+ F W + ++ N+
Sbjct: 61 HLYPAYGWVMFVAVFLWLVTIVLFNL 86
>AF137386-1|AAD33060.1| 182|Homo sapiens plasmolipin protein.
Length = 182
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 122 HPYPAEEWVCFVSAF-WPICALIINV 48
H YPA WV FV+ F W + ++ N+
Sbjct: 61 HLYPAYGWVMFVAVFLWLVTIVLFNL 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,915,500
Number of Sequences: 237096
Number of extensions: 527577
Number of successful extensions: 1258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 76,859,062
effective HSP length: 77
effective length of database: 58,602,670
effective search space used: 1347861410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -