Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L13
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    31   0.19 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   1.8  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    27   2.3  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   4.1  
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    26   5.4  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +1

Query: 148 ISSDIFNEVYVKLLKLVCERVSXISQLHLTFNAYVXKTLQLKXIIKWLYTEFILLASLVV 327
           ++S   +E + KLL L C RV  + QL L    Y+ +TL     IK +    + L+SL+ 
Sbjct: 780 VASSTIDE-FQKLLCLCCNRVDCVRQLALECMNYIMETLPHLLGIKEILFSVLELSSLLW 838

Query: 328 SSTT 339
            + T
Sbjct: 839 KART 842


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -1

Query: 491 DPFTDSNTCPTFIPSLWPNATTTFL 417
           DP +D+ + PTF+PS  P+ TT +L
Sbjct: 20  DP-SDAQSSPTFVPSANPSLTTPWL 43


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 238 FNAYVXKT-LQLKXIIKWLYTEFILLASLVVSSTTMITIFLESRLRKRLDFPLHI 399
           F  Y   T + L+ +I  +    + +  L+   T +I + LES LR  L FP+ I
Sbjct: 403 FKLYKTTTEMYLRQVISRMPPVSLEMQVLLHKQTQLIDLLLESSLRNSLSFPMLI 457


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 296 VYNHFIXFFNCSVXYTYALNVKCNCEXYETRSQTNFSNFT*TSLKIS 156
           ++  F+ +   S+ YT  LNV   C  ++    T   +FT   L ++
Sbjct: 689 MFTSFVQYIFLSIMYTNVLNVYAFCNTHDVSWGTKGDHFTNNDLGVA 735


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 464  PTFIPSLWPNATTTFLFSXCNLICKGKSKRFL-SLDSRNIVIIVVDETTRLANNINSVYN 288
            P+F+ +++P+ T   L    NL+  GK +R L S   + I+  +  E + L N      N
Sbjct: 831  PSFLETMYPDFTQLILNRAINLL--GKPERLLESAAGQFIISFITSEKSDLLNTHTDFVN 888


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/53 (20%), Positives = 26/53 (49%)
 Frame = -1

Query: 365 LDSRNIVIIVVDETTRLANNINSVYNHFIXFFNCSVXYTYALNVKCNCEXYET 207
           + SR I ++      + +  +  V NHF+  +  ++  T++ N+K   + + T
Sbjct: 4   IKSRRIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFAT 56


>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 259 TLQLKXIIKWLYTEFILLASLVVSSTTMITIFLESRLRKRLDFPLHIKLXYEN 417
           T+Q+K +I+W+  E ILL+            F  + L   L  P    +  EN
Sbjct: 508 TIQVKALIRWIDVELILLSKDTKKPARYFAEFKHADLNGYLVKPKEYTMEGEN 560


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 153 RNINSRTYLNFLSYIYSLFLI 91
           +N+ S  + NFL Y+ SLF I
Sbjct: 89  KNVTSNIFKNFLHYLKSLFPI 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,697
Number of Sequences: 5004
Number of extensions: 40310
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)