Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L13
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    73   2e-13
Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
 Frame = +1

Query: 367 LRKRLDFPLHIKLXYENKKVVVAFGQRDGINVGHVLLSVNGSPVTGXTTE---DNXXVFX 537
           + K  ++P+ + L   ++K VV FG++DGI + + + SVNG  V+G   +       V  
Sbjct: 30  VEKTYEWPIDVHLEEVDQKAVVVFGEKDGIKLRYYVKSVNGETVSGTRLQLGAQQVNVLE 89

Query: 538 IIQAKENYPLSLKFGTVRATTNEKIVLASMFYPLF 642
            +Q +++YP+++KF     +TNEKI+L+SMF+ LF
Sbjct: 90  YLQEEDHYPVTVKFAAPTVSTNEKIILSSMFHSLF 124



 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +3

Query: 291 IYGIYIVSKSGGLIYNYDHNIPRVETEKTFGFPL 392
           I  ++I++++G LIY+++      E EKT+ +P+
Sbjct: 5   IQHLFIINRAGSLIYSWEARTETPEVEKTYEWPI 38


>Z37983-4|CAA86057.1|  803|Caenorhabditis elegans Hypothetical
           protein B0393.4 protein.
          Length = 803

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -1

Query: 416 FSXCNLICKGKSKRFLSLDSRNIVIIVVDETTRLANNINSVYNHFIXFFNCSV 258
           F    ++C    +RF+ L  ++ + ++VD    LANN+   Y+ F    NC V
Sbjct: 651 FKDPGMLCDKNDRRFI-LVLQSELDLMVDSMKHLANNVGFHYDGFPVTPNCFV 702


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,087,012
Number of Sequences: 27780
Number of extensions: 221858
Number of successful extensions: 594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)