Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_L12
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 236 9e-63
02_05_0416 + 28791512-28792012 233 1e-61
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858... 31 1.0
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 2.3
02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833... 28 7.1
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726... 28 7.1
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 28 7.1
08_02_0208 - 14318485-14319283,14319704-14320170 27 9.4
07_03_0574 - 19629875-19631032 27 9.4
07_03_0313 + 16620817-16621515 27 9.4
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 9.4
03_06_0499 - 34354040-34354528 27 9.4
>04_04_1026 + 30214437-30214937
Length = 166
Score = 236 bits (578), Expect = 9e-63
Identities = 113/162 (69%), Positives = 138/162 (85%), Gaps = 1/162 (0%)
Frame = +1
Query: 127 PPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITV 303
PPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV
Sbjct: 2 PPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61
Query: 304 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAXIMRNRS 483
+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA IMRNRS
Sbjct: 62 KLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNRS 121
Query: 484 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 609
MA+ ++G+VKEILGT SVGCTV+G+ P DL +I+ G + I
Sbjct: 122 MAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
>02_05_0416 + 28791512-28792012
Length = 166
Score = 233 bits (569), Expect = 1e-61
Identities = 111/162 (68%), Positives = 137/162 (84%), Gaps = 1/162 (0%)
Frame = +1
Query: 127 PPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKITV 303
PPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++TV
Sbjct: 2 PPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTV 61
Query: 304 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAXIMRNRS 483
+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA +MR RS
Sbjct: 62 KLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPRS 121
Query: 484 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 609
MA+ ++G+VKEILGT SVGCTV+G+ P DL +I+ G + I
Sbjct: 122 MAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVEI 163
>11_04_0079 -
13284869-13284929,13285518-13285639,13285749-13285820,
13286048-13286200,13289510-13289709,13289745-13289947,
13289991-13290181
Length = 333
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 602 KAPLLMSSIRSCGGLPSTVHPTDCAVPRISF 510
+APL S+RSCG L + P + ++PR+ +
Sbjct: 120 QAPLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 280 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 408
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>02_05_0528 -
29782382-29782864,29782994-29783092,29783319-29783387,
29783781-29783888,29783965-29784274,29784772-29784812,
29784886-29784942,29785290-29785448,29785587-29785655,
29785728-29785877,29785967-29786098,29786347-29786433,
29786516-29786686,29786760-29786960,29787348-29787416,
29787510-29787618,29787887-29788005,29788676-29788780,
29789377-29789755,29790022-29790150,29790223-29790402,
29791310-29791469,29791604-29791744,29791832-29792021,
29792100-29792161,29792879-29793107
Length = 1335
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 236 DRPRGPILGAKDDVAPTSPPTHRKFTILISFGSNL 132
D GP G DD + T P H + T I F N+
Sbjct: 646 DEDSGPRPGTSDDSSATKPAEHNESTAEILFNPNV 680
>02_04_0236 -
21170753-21170794,21171089-21172220,21172332-21172601,
21173043-21173305,21173406-21173492,21174149-21174326,
21174784-21174984,21175769-21176025
Length = 809
Score = 27.9 bits (59), Expect = 7.1
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 3/104 (2%)
Frame = -3
Query: 389 GGSLRALMIRAAAEGTTAIWACLF*TVSCTVILRPFQSLVALAMSSPTFLGDRPRGPILG 210
GG L AL A+ + +W F T V+LR SL+ S L + +
Sbjct: 317 GGVLFALEEAASWWRSALLWRAFFTTAVVAVVLR---SLIEFCRSGKCGLFGQGGLIMFD 373
Query: 209 AKDDVAPTSPPTHRKFTILISFGSNLGGHF---VDYLVQLYTII 87
VA S P IL G GG F +D ++++Y+II
Sbjct: 374 LSSTVATYSTPDLIAIIILGIIGGIFGGLFNFLLDKVLRVYSII 417
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -3
Query: 212 GAKDDVAPTSPPTHRKFTILISFGSNLGGHFVDYLVQ 102
GA+ ++ P+ P + +I SN VD+LVQ
Sbjct: 245 GAQQELGPSKTPLGLRLEYMICEASNKSSQLVDFLVQ 281
>08_02_0208 - 14318485-14319283,14319704-14320170
Length = 421
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 224 GPILGAKDDVAPTSPPTHRKFTILISFGSNLGGHFV 117
G GA DD P P R + +SF +GG +
Sbjct: 256 GDASGANDDNEPAGRPLKRSKKLRVSFRDQVGGELI 291
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 458 IPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 330
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 287 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 150
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 163 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 264
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>03_06_0499 - 34354040-34354528
Length = 162
Score = 27.5 bits (58), Expect = 9.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 491 RAIDLFLMXFA-IPITSSREMLPLCLIFFCFLRSRGGSLRALMIRAAAEGTTAIWACLF* 315
R I+ +L+ ++ + S ++ L FF RGG R+L AA+G A W C
Sbjct: 47 RGIERYLLSWSDFLLGSGAKLKEKYLGFFSGEGERGGEARSL----AAKGAAAAWPCCDN 102
Query: 314 TVSCTVILRP 285
CT + P
Sbjct: 103 CGGCTKSIPP 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,556,559
Number of Sequences: 37544
Number of extensions: 401980
Number of successful extensions: 1079
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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