Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_L12
(634 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 254 5e-68
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 68 5e-12
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 28 4.8
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 28 6.4
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.4
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.4
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.4
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 28 6.4
AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin... 28 6.4
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 28 6.4
Z68748-2|CAA92955.3| 374|Caenorhabditis elegans Hypothetical pr... 27 8.4
AF305937-1|AAG37064.1| 348|Caenorhabditis elegans NADH pyrophos... 27 8.4
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 254 bits (621), Expect = 5e-68
Identities = 115/161 (71%), Positives = 142/161 (88%)
Frame = +1
Query: 127 PPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQ 306
PPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T +
Sbjct: 2 PPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTCK 61
Query: 307 LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAXIMRNRSM 486
LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I IA IMR RSM
Sbjct: 62 LTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRSM 121
Query: 487 ARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 609
A+ L G+VKEILGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 122 AKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +1
Query: 469 MRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 609
MR RSMA+ L G+VKEILGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 1 MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 47
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 404 SRKISNTTATSPLRM*SELRXS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRAGR 565
SR +S TTA S +L TD+ + A KR+ A +DVLWR +
Sbjct: 94 SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 147
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/54 (35%), Positives = 26/54 (48%)
Frame = +2
Query: 404 SRKISNTTATSPLRM*SELRXS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRAGR 565
SR +S TTA S +L TD+ + A KR+ A +DVLWR +
Sbjct: 35 SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 88
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 545 HPTDCAVPRISFTEPERYRAIDL 477
HPT CAV F +P +Y IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 405 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 280
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 405 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 280
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 405 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 280
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 405 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 280
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 405 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 280
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin
protein 73 protein.
Length = 577
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 297 DLETLPVTCGLGNVITHLFRRQTKRTDFR 211
D ++LP+ C LG V+ + ++ TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 405 LFTITRRLLKGSDDKGCCRG--NNSYLGLSVLNCQLHSDLETLP 280
+F + R L+ GSD + G NNS + V NC H+D T+P
Sbjct: 1 MFPLVRELVCGSDYELLETGWRNNSNIP-QVTNCGQHTDFSTIP 43
>Z68748-2|CAA92955.3| 374|Caenorhabditis elegans Hypothetical
protein F13H10.2 protein.
Length = 374
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 221 PILGAKDDVA--PTSPPTHRKFTILISFGSNLGGHFVDYLVQLYTI 90
P+ G D A P P +K +L G++LGG F D + + T+
Sbjct: 112 PLFGTSIDAADPPEDSPISKK-EVLKQLGNSLGGRFTDIRMAMLTM 156
>AF305937-1|AAG37064.1| 348|Caenorhabditis elegans NADH
pyrophosphatase protein.
Length = 348
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 221 PILGAKDDVA--PTSPPTHRKFTILISFGSNLGGHFVDYLVQLYTI 90
P+ G D A P P +K +L G++LGG F D + + T+
Sbjct: 86 PLFGTSIDAADPPEDSPISKK-EVLKQLGNSLGGRFTDIRMAMLTM 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,785
Number of Sequences: 27780
Number of extensions: 320607
Number of successful extensions: 793
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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