Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_L09
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit S18|... 32 0.062
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 1.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.3
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 27 3.1
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 26 4.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.4
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 7.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 7.1
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 7.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 9.4
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 9.4
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 9.4
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 9.4
>SPCC18B5.04 |rsm18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 166
Score = 32.3 bits (70), Expect = 0.062
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +2
Query: 323 LILSQFVRSDGCMLPKRITGLCKRQQKKIGKMVSMAQKAGLM 448
+ILS+FV G + P+ TGL + Q+ + + + A+ AG+M
Sbjct: 114 VILSRFVTELGRIKPRGDTGLTAKNQRLLSRAIRRARAAGIM 155
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 436 FLSHRNHFPNLFLLSFTQARDALR*HATVRSYKLTQDKYISM 311
F +RNHF NL T+A D H + +Q K++S+
Sbjct: 1016 FTKYRNHFGNLMTSEETKAPDNNDLHKRLSDVINSQQKFLSL 1057
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 203 PPNVTPPLP--NIDLSLTKLPSSEKPP 277
PP++ PPLP NI S T P + PP
Sbjct: 966 PPSIPPPLPVSNILSSPTSEPPKDHPP 992
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 116 KEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNIDLSLTKLPSSEK 271
K +RE T+ + ++ G+ PS T L P +PN D S+T E+
Sbjct: 1559 KALREITKERDRLLHGLQGPSVPTSPLKAPTASQLIIPNFDGSITNYSGEEE 1610
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 537 LWSHQSKC*ISCSDFLFVGSFLELDGVKLIIRPAF*AIETIFPIFFCCLLHKPVMRFGSM 358
LW HQ + D L V S ++D +K + P ++T+ + LL M+F SM
Sbjct: 785 LWFHQRTSPLLLQDLLGVESLEDIDSLKALELP---TLDTVLSVQVRNLLSSLRMQFPSM 841
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +2
Query: 146 NLVIEGVTLPSPRTELLVRPPNVTPPLPNIDLSLTKLPSSEKPPCYMCALGLDVKHTDVL 325
N+ E +P+ E + VT P N D + PSS+ P + A ++H D
Sbjct: 17 NMEQEDDQVPAVAAETVPLKRYVTNPGANRDEEVAAAPSSQDTPYFDYAYERSLRHQDAK 76
Query: 326 ILS 334
L+
Sbjct: 77 FLA 79
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 173 PSPRTELLVRPPNVTPPLPNI 235
P+P++EL RPP PP P+I
Sbjct: 131 PTPQSEL--RPPTSAPPRPSI 149
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -1
Query: 306 TSNP--NAHI*HGGFSEDGSLVNERSIFGSGGVTFGGLTSSSVRGEGSVT 163
TSNP NA G +E + + S+ G+GGVT SS++ G S++
Sbjct: 814 TSNPINNATANTSGMTEKAA-GHRDSVIGNGGVTGANSMSSTLGGLSSMS 862
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 131 RTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNID 238
R +NL G+ LPSP + PN P P+I+
Sbjct: 552 RGRASNLGDVGLRLPSPSPRIHTIVPNSAPEHPSIN 587
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 498 HYKKFNTYFDETTIFXKREMRWTER 572
H K ++ Y D I+ +RE +W +R
Sbjct: 77 HSKVYDLYRDSPKIWLRRERQWLQR 101
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 92 QLQTNLNIKEIRERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNIDLSLTKLPSS 265
QLQ +I +I++ E T G S + L ++ LP+ ++ +T LP++
Sbjct: 4367 QLQDGQDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELPDYNVKITNLPAA 4424
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 233 IDLSLTKLPSSEKPPCY 283
I+LSL ++P S +PP Y
Sbjct: 269 IELSLKEMPQSREPPSY 285
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 9.4
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 77 YSSLYQLQTNLNIKEIR--ERTEGTNLVIEGVTLPSPRTELLVRPPNVTPPLPNID 238
Y SLY ++N+NI+ I+ E + N + G P+ ++++V + + PL +D
Sbjct: 40 YKSLYPFESNINIRNIKNEESYDIPNEYLVGEIFPT-NSKVIVE--SFSSPLKKLD 92
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.0 bits (52), Expect = 9.4
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -1
Query: 327 ISTSVCFTSN-PNAHI*HGGFSEDGSLVNERSIFGSGGVTFGGLTSSSVRGEGSVTPSIT 151
IS SV N PN+ GF E S+VN S GV +S+ E T S+T
Sbjct: 273 ISNSVFIEQNGPNSDT-VSGFKETSSIVNSSSTTEKPGVALDSQNDTSIFNE-EQTNSLT 330
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 164 VTLPSPRTELLVRPPNVTPPLPNIDLSLTKLPSSEKPPCYM 286
V+ P P + + + P +P P + S PSS P M
Sbjct: 312 VSTPVPMSPISISPAKPSPQSPKLSQSAVGHPSSSIPAAAM 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,301
Number of Sequences: 5004
Number of extensions: 56352
Number of successful extensions: 172
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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