Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L06
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   2.9  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   8.9  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/56 (25%), Positives = 20/56 (35%)
 Frame = +1

Query: 421 LRCCD*RTRARDQAH*LPAHEGKADRLRNRPHHVQGPRQTRRGRAAHQPSSTPSSW 588
           L  C   T   ++A   P    K+  L   PH    P   ++      P  T S+W
Sbjct: 252 LSTCTRTTLKNNRASPYPMQRPKSASLSPPPHVYNPPDHIQQATPYSAPGPTYSTW 307


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 494 TGSVTDLITYRAPAKHVVGERRISPRARPQAGE*RHQQHP 613
           T +   L     P ++   +  I+PR RP+A + + +  P
Sbjct: 290 TDAAEFLAAQEIPGQNPGEKTNIAPRERPRATDHQRRNEP 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,959
Number of Sequences: 336
Number of extensions: 2506
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)