Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_L06
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 58 8e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 54 1e-07
03_02_0641 + 10076105-10076430,10076496-10076667,10076775-100769... 29 3.2
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.2
11_01_0752 - 6327269-6327764,6328571-6328839 28 5.6
09_02_0014 - 2977053-2977296,2977719-2978098 28 7.5
01_06_1124 - 34679205-34680926,34681438-34682811 27 9.9
01_05_0308 + 20710454-20710570,20710917-20710999,20711114-207112... 27 9.9
01_01_0876 + 6862321-6862398,6862442-6862747 27 9.9
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 57.6 bits (133), Expect = 8e-09
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +2
Query: 302 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 481
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 482 RG---KLTGSVTDLITYRAPAK 538
RG +L VT L + P K
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEK 172
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Frame = +2
Query: 335 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 505
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 506 TDLITYRAPAK 538
T L + P K
Sbjct: 194 TPLTEFDHPEK 204
>03_02_0641 +
10076105-10076430,10076496-10076667,10076775-10076962,
10077128-10077286,10077518-10077863
Length = 396
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 649 SLKLLSQVLMTSRMLLVTSLS-SLRACSRADAPLSHDVFGGGPVRDEVGYGA 497
S ++ +L+ + L ++LS L R DA +S DVF G VRD+ G GA
Sbjct: 17 STSIVFLLLLHAFSLPASALSFGLARRHRKDAAVSCDVFSGSWVRDDGGGGA 68
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 362 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 478
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>11_01_0752 - 6327269-6327764,6328571-6328839
Length = 254
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 451 RDQAH*LPAHEGKADRLRNRPHHVQGPRQTRRGRA 555
R A LP+ G +R R RP + P RRGRA
Sbjct: 133 RGAARLLPSTRGDRERCRVRPRRPRLPGARRRGRA 167
>09_02_0014 - 2977053-2977296,2977719-2978098
Length = 207
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 484 GKADRLRNRPHHVQGPRQTRRGRAAHQPSS 573
G A +RP PRQ R R+ HQP +
Sbjct: 108 GSASTTTSRPRATPYPRQRTRPRSVHQPGA 137
>01_06_1124 - 34679205-34680926,34681438-34682811
Length = 1031
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 346 VNPVLSHGGLLLDRYGEPPRLREA 417
+NP + H G ++D G RLREA
Sbjct: 355 INPDVKHFGCIIDMLGRAGRLREA 378
>01_05_0308 +
20710454-20710570,20710917-20710999,20711114-20711264,
20711369-20711468,20711592-20711684,20711891-20711939,
20712024-20712121,20712300-20712406,20712498-20712671
Length = 323
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 153 FDDTQKNMRS*KQ*LYKSSLYTQLAQKATYNSQEIQN 43
F DT K+++ K LY ++ Y +LA + QE+ N
Sbjct: 34 FSDTIKDLKMLKSQLYSAAEYFELAYTQEDDKQEVMN 70
>01_01_0876 + 6862321-6862398,6862442-6862747
Length = 127
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 273 GMSGSPWSRLATT**GNRSRRKWPRQSST*PWGLTSRSI 389
G GSP L+ G R R WP + P G T+R I
Sbjct: 6 GGGGSPPPSLSDLAGGGRGRPIWPEEGGGRPAGATARGI 44
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,280,294
Number of Sequences: 37544
Number of extensions: 336987
Number of successful extensions: 916
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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