Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L05
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    58   8e-10
SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    28   1.3  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    27   1.8  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   4.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   4.1  
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom...    26   5.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.4  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   9.4  

>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 58.4 bits (135), Expect = 8e-10
 Identities = 26/116 (22%), Positives = 63/116 (54%)
 Frame = +2

Query: 182 LXEIVSSEDLQKFERVFHEQLHQGNVSHKAQFEYAWCLVRSKYPTDIRKGILLLKELFNS 361
           +  I+S ++  + +  +  +  Q  ++ + +F  AW LVRS     +++G+ L   ++  
Sbjct: 15  IDSIISVDEFLQIKEQYDAE--QPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKD 72

Query: 362 HPEGKRDYLFYLAIGNARIKEYNKALHYVKSFLEIEPANQQVLALERQINKRMEKE 529
            PE + + L+Y+A+ + ++K+Y ++  Y+   L  +P + + L L+ ++   + KE
Sbjct: 73  SPERRLECLYYIALSHYKLKQYEESRRYLNMLLSKDPNSPEALKLKNRLYDAVTKE 128


>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 108 IFLFVNVKYLIKVIIYSN-RL*WKTYXTRLFHRKICK 215
           ++L VNV+  IK I+Y N  L W  +   + + K+C+
Sbjct: 14  LYLMVNVQCRIKEIMYWNICLYWDVFSKLIIYNKVCQ 50


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 356 NSHPEGKRDYLF--YLAIGNARIKEYNKALHYVKSFLEIEPANQ 481
           NS+P    ++ F  Y+ +   R +EYNKA+  +  +L + P NQ
Sbjct: 113 NSYPNRNAEHFFPAYIMLLIQR-QEYNKAMKLLDEYLLLPPYNQ 155


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 139 SKLSFIVTGYNGRRIXRDCFIGRFAKIRKGLS*TIAP 249
           SKLSFI + +   RI +D F    A IR  L  ++ P
Sbjct: 865 SKLSFIGSNHTRYRIDKDEFSSGIASIRGTLMSSVLP 901


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 13  NRQNCQTIHNSIYSCIANLPTFSLI 87
           N+Q    I   IYSC   LP  SL+
Sbjct: 136 NKQRILAILRYIYSCFTKLPAISLV 160


>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 197 SSEDLQKFERVFHEQLHQGNVSHKAQFE 280
           +  +++  E++ HEQL++ N   K +FE
Sbjct: 162 NQREVESLEQLVHEQLNKLNTESKMEFE 189


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 167 IMEDVLXEIVSSEDLQKFERVFHEQLHQGNV 259
           +  + + +++ SE+L+K  RVF +   +GNV
Sbjct: 214 LYNEEIRDLLVSEELRKPARVFEDTSRRGNV 244


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 236 EQLHQGNVSHKAQFEYAWCLVRSKYPTDI 322
           +  H G ++ K Q E+AW +V   Y + +
Sbjct: 144 QAFHDGIINQK-QLEFAWSIVNDSYASSL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,672
Number of Sequences: 5004
Number of extensions: 53409
Number of successful extensions: 148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)