Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_L05
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0194 - 41896831-41896895,41897377-41897440,41898074-418981... 48 9e-06
05_04_0140 - 18358997-18359082,18359255-18359318,18359469-183595... 36 0.037
09_02_0417 - 8915604-8916779,8916863-8917270 32 0.45
03_05_0038 + 20121924-20122080,20123182-20123843 29 3.2
05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722... 29 4.2
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 29 4.2
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377... 29 4.2
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095... 28 5.6
09_01_0116 - 1797740-1797788,1798087-1798166,1798245-1798424,179... 28 5.6
01_01_0915 - 7215863-7216063,7216743-7216802,7220032-7220091,722... 28 5.6
06_01_1083 - 8859190-8859450,8859555-8859626 27 9.7
>01_07_0194 -
41896831-41896895,41897377-41897440,41898074-41898195,
41898304-41898433,41899659-41899751
Length = 157
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 284 AWCLVRSKYPTDIRKGILLLKELF--NSHPEGKRDYLFYLAIGNARIKEYNKALHYVKSF 457
+W LV S+ D+ +GI +L+ + P R+ L+ LA+G+ R +Y ++ ++
Sbjct: 54 SWALVHSRNTDDVNRGIAMLQASLGGSKSPLEAREKLYLLAVGHYRNGDYPRSRQLLEHC 113
Query: 458 LEIEPANQQVLALERQINKRMEK 526
LEI+P Q L+L++ + ++ K
Sbjct: 114 LEIQPGWGQALSLKKTVEDKIAK 136
>05_04_0140 -
18358997-18359082,18359255-18359318,18359469-18359583,
18360101-18360216,18360420-18360541,18360628-18360757,
18361328-18361420
Length = 241
Score = 35.5 bits (78), Expect = 0.037
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 284 AWCLVRSKYPTDIRKGILLLKELF--NSHPEGKRDYLFYLAIGNARIKEYNKALHYVKSF 457
+W LV SK D+ +GI +L+ ++ P R+ L+ LA+G+ R +Y ++ V
Sbjct: 54 SWALVHSKNQEDVNRGIGMLEASLGQSNSPLQTREKLYLLAVGHYRNGDYPRSRQLVDRC 113
Query: 458 LE 463
LE
Sbjct: 114 LE 115
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 173 EDVLXEIVSSEDLQKFERVFHEQLHQGNVSHK-AQFEYAWCLVRSKYPTDIRKGILLLKE 349
E V+ E S+ + + H + H + K A F WC V++KYP+ +G+ L+ +
Sbjct: 151 EKVVAEYNSTIPATRRRELQHVKGHWHKIFRKVAHFHDCWCRVKAKYPSGHSEGMQLMDK 210
Query: 350 LFNSHPEGKR 379
+ + E R
Sbjct: 211 TWLMYNEEAR 220
>03_05_0038 + 20121924-20122080,20123182-20123843
Length = 272
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 538 WNGGGRRSCPCPWRARGTRNRTCFKEIAISLANECCS 648
W GGGR + WR R R C +E LA CC+
Sbjct: 215 WRGGGRVAQHQEWRPRPRRRCECLEEGGSVLA--CCT 249
>05_03_0678 -
16871481-16871620,16871836-16871881,16872170-16872243,
16872495-16872552,16872640-16872702,16872891-16873012,
16873132-16873247,16873367-16873428,16873497-16873589,
16874061-16874138,16874248-16874423,16874500-16874550,
16874964-16875078
Length = 397
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 375 FPSG*ELNNSLRSKIPFRISVGYLLR---TKHHAYS 277
F S E+ NS++ K PF+I +G + K HAY+
Sbjct: 87 FDSVAEMENSIKEKCPFKIDIGPVYSVDPAKRHAYA 122
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +2
Query: 416 IKEYNKALHYVKSFLEIEPANQQVLALERQINKRMEK 526
+KEY+KAL ++ L+ +P NQ++L R+ +R+ K
Sbjct: 644 MKEYDKALETYQAGLKHDPNNQELLDGVRRCVQRINK 680
>04_03_0306 +
14136338-14136686,14137408-14137442,14137701-14137778,
14138046-14138124,14138731-14138823,14139472-14139556,
14140270-14140345,14140669-14140794,14141039-14141137,
14141238-14141339,14141561-14141671,14141809-14141904,
14142488-14142539,14142624-14142735,14142879-14142943,
14144124-14144521,14145236-14145330,14145989-14146015,
14146081-14146156,14146368-14146421,14146741-14146863,
14146955-14147023
Length = 799
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 407 NARIKEYNKALHYVKSFLEIEPANQQVLALERQINKRM 520
N+ +KE N H + L++E + Q LA+ER NK +
Sbjct: 678 NSSLKESNIFSHSLLRLLKVEESLSQELAIERDKNKSL 715
>10_08_0940 -
21708557-21708733,21709058-21709142,21709330-21709551,
21710640-21710815,21711883-21711946,21712433-21712507,
21715114-21715199,21715297-21716715
Length = 767
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 565 PCPWRARGTRNRTCFKEIAISLANECCS 648
PC W A R C E+A SL++ C S
Sbjct: 98 PCLWSALDLRAHRCDAEVASSLSSRCGS 125
>09_01_0116 -
1797740-1797788,1798087-1798166,1798245-1798424,
1799223-1799324,1801026-1801178,1801804-1801932,
1802791-1802930,1803941-1804066,1805792-1805963
Length = 376
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 416 IKEYNKALHYVKSFLEIEPANQQVLALERQINKRMEKE 529
IK+Y KA L+++PAN+ + R + M+K+
Sbjct: 333 IKDYGKACEAFADGLKLDPANEDIKKALRDAEEAMKKD 370
>01_01_0915 -
7215863-7216063,7216743-7216802,7220032-7220091,
7221138-7221203,7221927-7221992,7222334-7222411,
7222940-7223297,7224548-7224606
Length = 315
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 320 YP-LDTCCALNTMRIQTG-LCGKRSLGAIVHERP 225
YP L CC+ N M+ QTG + G+RS + E P
Sbjct: 213 YPYLGQCCSANPMQQQTGIMAGERSTDGLFPEFP 246
>06_01_1083 - 8859190-8859450,8859555-8859626
Length = 110
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 544 GGGRRSCPCPWRARGTRNRTCFKEIAISLANECCS 648
GG R C + G + T +K+ ++ N+CC+
Sbjct: 44 GGNLRPWECSPKCAGRCSNTQYKKACLTFCNKCCA 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,732,244
Number of Sequences: 37544
Number of extensions: 307720
Number of successful extensions: 733
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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