Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_L05
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.8  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 28  QTIHNSIYSCIANLPTFSL 84
           Q +H  +YSC+A  P  S+
Sbjct: 72  QEVHAQVYSCLARSPAGSV 90


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 375 FPSG*ELNNSLRSKIPFRISVGYLLRTKHHAYSNWALWETFP 250
           F  G EL     + +   +++G+L   KH+     ALW   P
Sbjct: 64  FTPGQELPARGLTAVFLGLNLGFLAWAKHNPRGKDALWSLVP 105


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +2

Query: 380 DYLFYLAIGNARIKEYNKALHYVKSFLEIE 469
           +Y  Y    N     YNK L+Y    + IE
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINIE 355


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 216 NSKGSFMNNCTKGTFPTKPS 275
           NS GSF   C      T PS
Sbjct: 69  NSPGSFTAGCHSNLLSTSPS 88


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = +3

Query: 216 NSKGSFMNNCTKGTFPTKPS 275
           NS GSF   C      T PS
Sbjct: 69  NSPGSFTAGCHSNLLSTSPS 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,776
Number of Sequences: 438
Number of extensions: 3613
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)